GgaINT1026669 @ galGal4
Intron Retention
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6892755-6893137:+
Coord C1 exon
chr17:6892755-6892828
Coord A exon
chr17:6892829-6893021
Coord C2 exon
chr17:6893022-6893137
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGAAAATATTTGCATTGCAGAAA
3' ss Score
4.32
Exon sequences
Seq C1 exon
AAGGTGCTGCTGAAGTTTCTGGGACAGATGGTGGATGCTTTGTTTTATATACACAAGCAAAATATTTTCCACAG
Seq A exon
GTGAGCAGAAATCCTGTTCTCTTTGTTTGATGGGTCATTGTTCTTCATTCATTGTTATGAGACTGTTGGCTCAGTACAGCTGCTCACTTAAGAAGTGAATTTTACTTTCTAATGTGCGAAGATGCTGGAAATGTGTAGTTATATATCGTTAGAATTTGATTTCACATGCTGATGGAAAATATTTGCATTGCAG
Seq C2 exon
AAATCTCAAGCCATCAAACATACTTGTGACTGGTGAAACATCCTTCAAGCTTTGTGACTTTGGTACAGAAACACTTATGACCGACGAATGGAAATGGAAAATAAGAGTGGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.8=100)
A:
NA
C2:
PF0006920=Pkinase=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGCTGAAGTTTCTGG
R:
TCTTCCACTCTTATTTTCCATTTCCA
Band lengths:
187-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]