MmuINT0071288 @ mm10
Intron Retention
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26943131-26943992:+
Coord C1 exon
chr2:26943131-26943201
Coord A exon
chr2:26943202-26943876
Coord C2 exon
chr2:26943877-26943992
Length
675 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GGCCCTGTTCTTTGTTGCAGGAA
3' ss Score
10.87
Exon sequences
Seq C1 exon
TGGATGCATACCATGCTAAGCCAGGTATTGGATGCCATCGAGTACCTACATAAGTTGAACATCGTTCACAG
Seq A exon
GTGATGGAGCCTCCTCTGCAGGTTGGCCAAAACCCCTAGGCCTAGATGCCCAGGCCCAAGGACCAGATTTGGGCAGGATGGGGCATCTTCTGTGAACTCCCATTCTTGGCTAAGAGAACAGGGAACTTCCTTATGAAGCCCCTGAGTGCCTGACTCACCCCAAAGGCACAGGGCTGTGGGAGTTCGGGGGCCGAACAGGGTGGTTCTAAAGGGCGAGGAAACAGAGATAAGATGCCAAGGAAGAGAGGTGAGGTTGCCTGTAGTGATACAGACTCTGGACAGGCCAATAAGATTTGCTGCAATCCAAGCCTAGTCTTTGACCCTTGCACCCAGCTTCAGCCCCAAGATCTGCAGTGGGAAGAACCTGGGAAATGGCTTCCATCAACATGAGCCATATGAGCAAAGAGAATAGAGTGCCCATGCTAATGCCACCAGAAATACTAATGAGGGTCCTCAGTGTTTGTGCTTACAATGGGGTTCTTCCCTAATATACAGAAACAGAGTAGATGCCATGTTCTAGGAAACAAGTATTTAATAAGCAGGCTGAGCAGAGCATTTTCTTGAGGAGTGGAAAGTGCTGGAACTGGGTTGGAAGAGCAGGCTTAAGGCTCAGGCATGTGCTAGCCCTATCCCAGGCAGCTGCATGGTACCAGGGGGCCCTGTTCTTTGTTGCAG
Seq C2 exon
GAACCTCAAGCCTTCCAACATCGTCCTTGTTAACAGTGGCTACTGTAAACTGCAGGATATGAGCTCCCAGGCACTGATGACCCACGAAGCTAAGTGGAATGTCCGAGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897:ENSMUST00000055406:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(5.3=75.0)
A:
NA
C2:
PF0006920=Pkinase=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types