GgaINT1027247 @ galGal4
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19638462-19640426:+
Coord C1 exon
chr6:19638462-19638533
Coord A exon
chr6:19638534-19640297
Coord C2 exon
chr6:19640298-19640426
Length
1764 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GATGCTCTTCCCACTTGAAGGTA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGTGGTCCCTATCATGATCTCCTGCATAGTGTTTTAGGAGCATATACATGTTATAGACCGGATGTGGGATAT
Seq A exon
GTAAGTATTCTGAAATGTTTATAGCAGATGTGCTTAAAATATTTGCCTGTTAGATAAGTAGATTATCTAAACTTTATGCTACTAGAACCTCAAAACAATTTAAACCTTGGCACTTACTCATTTGATAGTAGTTACAGTGATGGTAATTCTTAGGGTTAATAAAATAGCTAAAAATGTATTGATATGACAGATGAGAATACTGTTTGGTTCACACAAGGAACTGTCTTTAAGCTGGTATGTTCACAAGGCATTCTAACTCTCAAACTCAGACGTCTACAAAAAAAAAACCAACTACCAGCAGCCTTCCAGGAAGCGCTCAGCCTGTTCTTATCCCAGTGTTGTTCCCACTGCTGCTATTTCCATAGTAATGCCCTACGATTTAGTAGGTCACATCTTTAAAATCCAACAACTCCACATCAGTTTTCCTGTCAAAGGCAGGAGTCAAAGAGTTTAGTGAGGATAAGATTGTTTGCAGCAAGAACTTAAATATGTAAAAAATAACGATGGTAAAATAATTAATCTGAACAGTATCAGCCTACAAAGGCAGCTAAATAACAAATGCTGTTCTTATTTTTTTGCCTTGGAGGGATCCTAGGAACGCTTTTCACAAGTTGTAATTGCTTTTGAGCAGAAGAACTTGAGACTGATCTATGCAACAGCACGTTATTTAGCCCAGGGTGTGTTTTCCTCTGTCAGATATGCTTACTACTCTGCATCAGTATCTAGCTGGCTTTTCATGTTTAAATGTTTTTAATTCTGTCATCTGTGAAATCATTTTTGGAGACCATAATCTTTAAGTGAGATTACAGACTCTGCAGATTCTGAGACTGCTTGTTCCAGGGTGGAGTTTTAAAGGGCGAACAAGTAATTTTTCATGGATGGGTCTTCGCTTTCTCCCTAGGAAAAGATAATACAACTGCAGCCAGTCTGAATGTTTCTGGTCACACATTTTAAATGTTAATATGACAATAGGTTTAGTCTTATTTCTGCACCCATTTGTGTCATAAAAATCTGCTGGACTGTTTCTGATGCATATCACTACTTTCTTCCCTAGATGGTTAAAATATTAAGTGTCTTTTTAAAATGAGGAGCAGGCAGCATAAATGCCTAGAAACAGCAGAATTATCATAATTGCAACTGAAATTGGTAAAACTATTTTTAGTATAATGAATATTCAGATTATCACTTAACTACATGAATGATAGTCTCCACTTATTGCAGACTGAAGTGTTTTTTTAAAAGAAAGTAATCACAAAAATGTAAAAACTTATAGCTAACCACTTGAGTGTAATTTTATGTATGTGAACAAATACTGTTTGGCAGCTGGGAAGATACATATTGACTGTTTTAAAACAGAATTTTGTCTCAATTCCAGCATATCTGCCTGGGTCTAAACTGTCCCATATGTGAGATTTTTTTTCCTCATGTCTGCTTTTCTCACAGCTTAACAATGAACTTAAAGCCAAGTTGTATTTTGTTTCCAGCCTGTGTGGTTTTCATTTTCTTGCATTCCAGGTTCTGGGAGGTTTCATGATTACAAGTCAAGGAACTTCTATCATGCATCTAAAACCTGCATCTGAAGAAATATTCATGTTGAAATCTAATTAGCTGCATGTATAGAAGTTATTTATCCTTGTTGCTTTTGTTCACCTGGAAATTATGTGTAATGGTGTTTGATGTACTGCAGCCTGTACAATATTTGCATTTCCAAAGATATACTGAGCTTACTCACCTATGTTTGCCTGATGCTCTTCCCACTTGAAG
Seq C2 exon
GTACAAGGGATGTCCTTCATTGCTGCTGTGCTCATTCTCAATCTGGAAGAGGCAGATGCTTTCATTGCCTTTGCTAACCTTCTAAACAAGCCATGCCAGCTGGCCTTTTTCCGTGTGGATCACAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCCCTATCATGATCTCCT
R:
TCCACACGGAAAAAGGCCAG
Band lengths:
191-1955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]