RnoINT0147921 @ rn6
Intron Retention
Gene
ENSRNOG00000036598 | Tbc1d12
Description
TBC1 domain family, member 12 [Source:RGD Symbol;Acc:9377071]
Coordinates
chr1:257592410-257593303:+
Coord C1 exon
chr1:257592410-257592481
Coord A exon
chr1:257592482-257593174
Coord C2 exon
chr1:257593175-257593303
Length
693 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
TATTCTTTCTTCCTTTGAAGGTC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GGTGGCCCATACCACGATGTTTTGCATAGTATCCTAGGGGCATATACATGTTACAGACCTGACGTTGGTTAC
Seq A exon
GTGAGTATTCATTTCAGTCTGCTCTCTACATACAAACATCTTGTCTATACTCCCAGGACAGCTCTTTACAGACACAGATGAAGTATCTGTGGCTCCTTTGAGCTTATTGGTTTACCTGAAGAGGAGGCTTTCCATCTCTTGCCAACTGCTTAGAAGGAAGCCAGCTATCATCCTATGGCGTATGTTGTATTCTACATGGGTTCTTTTGTTCCCATTTCTTTGTTCAAGCTTCTTTGCAGGATTTCCCTTTCATTTCTTTCTTGTGATTCCTCACAAATTCAGGCTCTTTTAAGCCCAACAACTTCTCCATTTGAATTTTAGTATTTTATCTTACAGCTCTCCTTTATTCTTTGTTCTTCATATGCTAGAATGTGAAAACAACCACTTAATTCTCATTAACATGTAATTTCGAAAGATTCAGATTAAGAAGGCATGAAAGGTAGTTGGTACACTGAGATAGGCTCTTAGACCAAATAAAAGCTGATTTAATTTTTTCTGATTAATTAAACTCTATCACATGAACAAATATAAAATTAGGGAAATTCACAGCCATTGAAATTTCATAGTAGTTGCTTTTACTGGGAAGAAGAACAAAACTGGTAAATTCTTCTTAATATCAGTTTGTAAATTTTGAGGAGTATAAATAAACCGTAGAATGATTTAAAACCATTTTTATTCTTTCTTCCTTTGAAG
Seq C2 exon
GTCCAAGGGATGTCCTTCATCGCAGCCGTACTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTTGCAAATCTCCTGAACAGGCCGTGCCAGCTCGCCTTCTTCCGTGTGGATCACAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036598:ENSRNOT00000018668:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.9=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATACCACGATGTTTTGC
R:
CACGGAAGAAGGCGAGCTG
Band lengths:
183-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]