GgaINT1027409 @ galGal4
Intron Retention
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4932434-4932839:-
Coord C1 exon
chr15:4932755-4932839
Coord A exon
chr15:4932548-4932754
Coord C2 exon
chr15:4932434-4932547
Length
207 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
GTTTTTTTTTTCCCCCTCAGTTT
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGGCGGCCGCCGGGCTCGGGGTGCTGCTGCTGCTGCTGCTGCTGCTGGCGGCTCCGTGCGCGGGGCAGCGCCATGGGGAGCCCG
Seq A exon
GTGGGTGGGAGGGCGCGGGGGGCGGAGGGAGGGGAAGGGAAAAGAAAGGAAGAGAGGAGAGGGGAGAGGAGAGGGCCGTGCGTGAAGGGAAGGGAGGACCAGAACAGCCTACGCGGGCTGAGGGGGCACGGCCTGGCGTGCCTCATACGTTGTGGTGATTTACCGGTTTCTGTGTGTGTTACAATGTGTTTTTTTTTTCCCCCTCAG
Seq C2 exon
TTTTTCAGCCTTCCTTTATCCACATGTCTGGGCTAAGAGTTAATTCGTTTTTTCTTGGAGATTCTTCAGGAGTTAATTTTTACATTGTTGTAGGTGCTATAGATAAAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683:ENSGALT00000005096:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]