HsaINT0165217 @ hg38
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123671113-123671614:+
Coord C1 exon
chr12:123671113-123671322
Coord A exon
chr12:123671323-123671506
Coord C2 exon
chr12:123671507-123671614
Length
184 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
CCCCTTTCCTTCCCGCCTAGCTT
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATAGCTCCGGGCGTTCGCTTGCAAGATGGCGGCGGCGGGGCAGTGGCTGCTGCGTTTTCGTGTCTGAGTCCTTCCTGGGTTCTAATGAGGGCGCGGTTCTGCTGTGCCCGGCCCGCGAGGTCTAAGGCATGGGCTTCCAGCCTCCGGCCGCTCTTCTTTTGAGGCTTTTCCTTCTGCAGGGCATCCTGAGGCTTCTGTGGGGGGACCTGG
Seq A exon
GTGTGTACGGCGCGGCAGTGACCTCGGTGGGCCGGGGCTGAGGGGACTGGGCGTTAAAAGGGCCAGACTTGGACTCCCCCGGGAGCTTCGGGAGTCGACAACGCCAAAGCAAGCCGCCACACACACCTTAGGCGGTGATTCTTCCACTGCTAACCCCTCCTTGTCCCCTTTCCTTCCCGCCTAG
Seq C2 exon
CTTTCATCCCTCCTTTTATCCGAATGTCCGGCCCTGCGGTCAGCGCGTCCCTGGTCGGAGACACCGAGGGTGTGACCGTGTCCCTGGCAGTGCTGCAGGACGAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778:ENST00000303372:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTTCGTGTCTGAGTCCT
R:
GGGACACGGTCACACCCTC
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains