GgaINT1028862 @ galGal4
Intron Retention
Gene
ENSGALG00000027242 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr17:6522063-6522694:-
Coord C1 exon
chr17:6522629-6522694
Coord A exon
chr17:6522149-6522628
Coord C2 exon
chr17:6522063-6522148
Length
480 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
3' ss Seq
TTCAACTCTTATCTTTTCAGAGA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTTGTATGAAATGAAGGTGGAGGATGCTAATGAAATAAACTGGGAAGAACTCAGTGATATTATTGG
Seq A exon
GTAAAAACTCTTTTCTTTTCTTATGGGTACAAACGATAGTTGAAACAGACTGTCCTAAATTCCTCAAAGGAATCAACTTTCTGCAGCCATATAAAAGACTATCTAATTTGCTAATGTACAATTGTATATCCTTGCATAGCACTGCACAATCTTCCAAACAAAGTAAAAATTGAACATAAAAGTACTGATACTGTGAATGCTAATACTTTCTGTGTGATCCTCTTGATGTTTTCCACAGGTTTTTTCAGCTTTGTTGTTTCTTTTTACTAACTAGGTAGTGAGTATGTGTAATGATATGTTTTAGGTGCTTACATTGAGGGGATTTGATACCTTGAAAACTTGTCTGTATTAGGATTTGCAGACTGTGCTTTCTACCTGAAGCAAAGCTAACTGTTTGACCAGTTCAATTCAATTGGTAACTCATGTAGAGTCAGTAGTGGTCCATTGCACCACTGTGCCTTTCAACTCTTATCTTTTCAG
Seq C2 exon
AGACGTTCCTGGAAGCTACGTTCAAGCAAAATTCTACAAGCTAAAAGTCACCTATGTTCCTTTTTGGCGAGCTAAGACTTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027242:ENSGALT00000046072:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]