HsaINT0174596 @ hg19
Intron Retention
Gene
ENSG00000125482 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:12397]
Coordinates
chr9:135254446-135262008:-
Coord C1 exon
chr9:135261943-135262008
Coord A exon
chr9:135254532-135261942
Coord C2 exon
chr9:135254446-135254531
Length
7411 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTCTTTCCTTTTCTAAAGTGA
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTTGTATGAAATAAATGTGGAAGATACTAATGAAATAGACTGGGAAGATCTTGCTAGTGCCATAGG
Seq A exon
GTAAGACCATTTGTTTAATATTAAACTAATTAAAATATAGAGATGACTTAATAAATACAATAACTCCCTATCATCTTACAGGGCTGATAATGATGCTGCATTTGGAATTTTGTATAAGTGGTGGTTAAAATTCAGTGTATTTGCTAGGAAACCAATTTGTTAGTGCAGAGGAAACTGTAATTTTAGGAGCAGTGTATACGTAAAGGCTCTGAGCTGCTAGGTAGATCAGGTTTTCATGACACTAAATACATCACTAGTTGGATATGTTTTTCATTTTTCTTCCCTTTTTTTAGTGTCACATAGATCATCACGCCTCAGGTGTTTTGTGATTACAGATTTTAGCTAGAGCATAATACCTATGGCCCACCCACCTCCCTCCTATTTCAGTTTTCCAGTGGAAAAATAATCGTGTAAGGAAGTATTACCATACAGTCGAGTTGACCTTGGCAGGCATTGGAGGTGATATTATAGGTACTTTAGTAACAATGAAGTGAATTTTCCCAGTACATACCTTTTATCAATTCCAATTATTGAAAAATCAAAGGCTCAGAATTACTCTTCACCCACCAAATACGAGGTGCCTATATGCCAGGCATTTTTCTAGGCTCTGGGGATACAGCATTGAACAAAAGACAAGTTCCTTGCCTGGTAGAGCATCCATTCTGCTGACACAAATGCCAAGTTTTGTATAGTATAGAATTAACCTAAAAACTACATTGATGATAACGATATCAAACTAATAATAATTATTGACTACCTTCTGTATACCAGGCACAGAGTAGGAACTCACATTTAGTTCTGGGAAGAGACTGTAAACAAATAAGCTCATTTCAGATAGCATGGTACCAAAAAGAAAACAAAAATAGAGTAGAAGGGACGTCGGGGGCAATCAGATAGAGTGGTTAGGGAAGACTATGGAAGCAGAAGCGGTGGCAGGGTAGCCATGCGGGGATGAGACTGAAGATGTTCGGACAGAGAGTAGTGAATGCGGACACCTTGAGCCAGCACTGGCTGGGCACATTCAAGGGACTGGAAAGGGACCAGGTGGCCCAGAACAGTGAGTAAAATGACGGCAGCGATGGGCTGGGTGCGTGTGCAGGCCAGACTCCCACGCCTCAGGGGACTTCAGACAGTTGACAACTCAGCACACGCTCCAGACATCCAGGAGTTCCAGTTACCTTTGTGTACCCAATTTGGAACTTTGTAAACACTAGCAATTCTCTGGTTTTCAGCCCAGCTCTCACTTCAAAATCATCTGGGGAACTTTTAAAAAATACCAGTGCCACGTGAATGGGATTGGTCTGGTGTGGGGTCTGGCTTCGCATGAATGGGATTGGTCTGGTGTGGGGTCTGGCTGTCAGGATTGTTCAGAGCTCCAGGTGACTCAGATGTGTTACCCTGCCGAGACCCCGTGCTTTAGCGCTGGTTAAATGACTTGGTCGGTTCCCAGTTAGAACGTTTTAGTTGTGTGTAACAATTCAAATACAGAACTGAATATCATGCCCCACCCATAAGGAAAAAGGACTTGACTGTTCAGTTTGATTTTGCTGTTTTTCTGGAATAGGTAATAGATTACGTAGTCCAGAATTAAAGAAACGTAGGCTGGGCACGGTGGCTCTTGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTTCAACTCCGTCTCTACAAAAATACAAAAATTAGCCAGGCATGATGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTAAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAGAAAAGAAAGAAAGAAAGAAACCTGAAAGGAAACACAGTGAAAAGTGTCCCCTTACCACTCACCAGCCACGCGTAGCCCTACAGGAAACCAGTATCTATTTTCCGTAGATGGTTTATGCAAAATGTCTGCAGGATCTGAGTGATGTTCTGATGGCTAATGTTGGCTATTTATACCTACTCTCTTTTGTTACTGCTTGAATAGGAGTTACCAGAGATTGTCTTTTCAAAGCACCAGCTTTGATTGCGTTGACCCTATCTTGTGATTATTCTAATGTCAGCTCTTTATCACGCCCTCCCTTCAGCTCTCTTTGAGTTTATTTTGCTGCTGTTCTTCAACTTCTTGAGATGGGTTCTTAGCTCATTTTCCATTTTTCTTTCTTTGTAATATACATTTAAGGCCATATGTTTTCTTCTAAGTACTGCTTTATTAGCAATGCCCAATTATTTTTTTCAGAAACTTTATTAGGAAAATTTTAGACAGATACAAAATAAATGAAGCTTCATGTACCCATCACCCCAGTTCAGCAACTGTCAAAATCCAGCCGTCCTTATTAAACATCTACATTCACTCCCTCCAATTACTGTTATCTGTTTTGGTAAATTTTACATACTTTGCAGCCTTAGTACCATTCAAAATTCAAATAATTCTAGTAATTCCATTTCTAGAAATACATTCTACAAAACAACTTCACACATACATGAAATGACTTGTATACAGAGTAACTGACTGCAAAAGGCCTGTTAATAGGGGACTGGCTATATATGTATTTTACCCATATAGTGACATTCTTTATAGCTACAAAAAATCATGAGAAAGCCCCTCGGTGGTGGGGCAAAGAAAGCGCCAAGATACAGTCTTGGGTGAGGAAACACTGCGTGGTTGCAGGGTGGTGTGCCAGCGCCACAGAACAGGAAAGCTGCAATGTGTGTGTTTATTCGAGACTTCCAGTCTCTGTGCTCTGGACCAAATAAATCAGACCAGCCCTCCCTCCAGCCCACCTGCCACCGAAGACACCCAAGAAAGGCAAATGAAATGTATGCAAAGTCTCTTAAAGGCTTCAAAAAGCTAAACAAGTTGCAAGAGTAACAGAAAGAACCCCGCATCCCCTTTACCCATAGTCGCCTCTTCTGAACATTCTGCTACGTTCACTTTATCATCCCTCTCTCCCTCCTCCAAGGGAATACGGTTTTTCCCATAACCATTCAAGAGTTAGTGGCAGATACCACTTCCCAAGCAAGGATGTTATTTTACATAACCATAGTACAATCGAGAATCAGGAAGTTTCACATTGATATAGTACACCCTCTAAAACATAGTCCACATTCAGATTTCACCAGTTGTCCCAGTAATGTCCTTGATAGCATTTTCCCCCTTTAATAATTGTTCCATTTCCTTAGTGTCCTTTTTTTTTTTTTTTTTGAAGACAAGAGTCTTACTCTGTTGCCCAGGCTGGAGTTACAATGGTGTGATCTCAGCTCACTGCACCCTCTGCCTCCCAGGTTCAAGCAATTCTTGTGCCTCAGCCACCTAAATAGCTGGAATTAGAGGCATGCACCACCCTGCCTGGCTAGTTTTTTTTTTAATTAGTTAATTTTTTTTTTTTTGAGACGGATTTTCACTCTTGTTGCCCAGGCTGGAGTGCAACAGCGTGATCTCGGTTCCCTGCAACCTCCACCTTCCGGGTTCAAGCAGTTCTCCTGTCTCAGCCTCTGAATAGCTGGGATTACAGGTACCTGCCACCATACCTGGCTAATTTTTGTATTTTTAATAGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTTACCTCAAGTGATCCACCCACCTCAGCCTCCCAAATTGCTGAGATTACAGGCGTGAGCCACCACACCTGACTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCTATGCTTGAACTCCTGGCCTTAATCCCTCTCAAAGTGCTGGGATTACAGACGTGAGCCACCATGCCCGGCCTTCCTTACTGTCTTTTAATCTATGAAGATCGTCCATCTTTGCTGTTGATGGTAGTGAAATTTTGGAGGAATACAGGCTAGGTGTTTTGTAGAATGTCCGCAGTTGGCACTTGTCTGGTATTTCCTCTTGAGGAGATTCAGGCTGTGTCCTTCGGGCAGGAGTACAGCATATTCCTGATGTTTGCTATCACTGCATTACGTCACAAGGTACATAATTCTCGTTTTGACTTTTTTTTATTATTTAGCTAAGGCAGCATCTGCCTCTTTTCCCCACTGTATAAAAATACTGGTTCTTCCTTTGGTGGTAAGAAATGGCTGTGGGAAGACATTTTAAGACTATATAAAGATCCTGTTCCTCTTTAAGCTTCTGTCAGTTTCCTTGTGGTTTTCATTTGCATTTCTCATGTGAGAAGTGAGATTGAACATGGCTCTTGTGTTTATAAGCTGTCTCTCTTTCCCTTCACTGTGAGCCTTCACTGCACATAGCTCTTGCATTTTAATCAGTTCCTGCGATTGGAGGGCCCACCACTCTCGATATCTCAACTTACTGCTTGCTACGCAAGGGAGAGCTGGGCTGCAGAGCACAGGCCCTCTACGTGTTGCCGAGCATCATGGGGCTCGGGGATCAGTGACTTTCAGATGCAGGGATGTTGAGGGATTGTTTGGCCTTTGGTTTTGGAAGGTAGACAGTGGGGTGAGGCTGCTGCAGCCTGGCTGACTTCCAGAAGTGTGGCTACTGGTGTGAGGTCGCCATTGGTCCATTAGGAAAGATTTTGTTTTGTTTCTAGTCAATATTCTGCGGAACCATTAGGGAGGGTTTAAACTGGTTCTGGTGGTTAGTTATTTATGGTTTGGGATTATAACCAAACAAGAAAGGACAATCCGTCTCTTCCTTCTTGAATGTGGAGAATTGGAAATTCTTAGTCCAGGCCCTGCCAGGACTCACAGATACATGCCGTGGTCCCAAAGTCTTTTCTTTTCTAGCTCATCTGAGGGGCAGGGTGCCCACTCTTCAGCATCATAGGCCCCAAGCAGGGAGGGTGCCAGGTGCTTTGAAGGAGGTGACGCTGATGTGCACCCCACCAGCTCCCATCTTGAGAACGACTTACATTGACAAAGCCCTTTATAATGTCAAACCACTTTTTAAAAATTCAACTTTTCGGCCGGGCGTGGTGATTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTGCTTGAGGTCAGGAGTTTGAGACCAACCTGCCCAACATGGTGAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCGTGGTAGCAGGTACCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGAATTGCTTGAACCCAGGAGGAGGAGGTTGCAGTGAGCCGAGATTGCGTCACTGCACTCCAGCCTGGGCCACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAATTCAGCTTTTCCATTAAATTTGTGTATGCTTTGTGACATTTCTTCAGATCACATGATTTTTAAAACTAAAATGGGTTTTTATGGTTTTAAATAAAATTACATGTTTAAAAACTGATTATTAAGCTGCACGTGGTGACACATGCCTGTTGTCCCAGCTACTCTGGAGGCTGAAGTGGGAGGATCGCTTGAGCCTGGGAGCCAGAAGTTGCAGTGACCCGAGATCACGCCACTGCATTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAGAAAATAAATTAAATAAAAATAAATAAAAGGGCCCCACAAAATCCAGGTAGGGGGTAACTGATGAACTGATTACCTATTTCAGATTTACGAATCTCAAAACTCTAAGATAGAGATTATGGCATCTAGTCAAATACTATTTGAAATACTACGTACTCTCAAAGTTTTAATAACAAAATGGTAAAAATTATATTGAAGGTTCAGTCTCCTCAGATTCTTAAAGACTTTGTGAATTATATAGGCAGGATTTAAGGATAGCATCTCCACCTAATGAGGTGTAACACTTGCTTGGTTTTAAAACGTCCAGATCAGTTCTTGTTGCTTCCTGAAGCATGGGCTTGGGTCTGCAGCATGTTGGGCGCACAGCATTATGGGAAGGGAAAAGGCACAGGCTGCCGTAGAGCTGGGGTTTCAGAGTGAGACAGATTTGGCATAGAGTCCAGGGACTCCACTTAAAGTCTGTGGGCAGTTGTTCCCTATTTGTCTGAGCCTTTGTTTCCTCATCTGCATTATGGTTTAATAGGCTGTCAGGAAGGCTAAAGGAGATAATGGGCCAGGTGCAGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCCAAAGCAGGTGGGTCACCTGAAGTCAGGAGTTCAAGACCAGTCTGGCCAGCATGGTGAAGCCCTATCTTTACTAAAAATACAAAAATACAAAAATTTAGCTGGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGCCAGGAGAACAACCTGAACCTTGGAGGCAGAAGTTGCAGTGAACTGAGAATGTGCCTCTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCCAAAAAAAAAAAAGAAGATAATGCGAGAAAGAGACATTGTCTGGTACCTGGCACATACGTCCTCAGCTAGTGGTTGCTGTGATGAAGAGGTCGGAAGAATCTGATCATCTTTTACCTCTACATACTTAGCAGATCAAATTCTTCATGCTAATCATTTTAACAACTGGATTAGTTAATTGTTTTTTAATGTTCCCCTTTTATTAGGAAAAAGTGCCCAAAAAGTTTAGTGGTTTTTTACTTTAAAATACAATTTAAGAATAATTTCTGACCCACTTATTGTAAATTGAAATGTTTTGTAAATTGAAAACGTACCAAAACCTCATAAGCATCTGCTCTTTTTAGCTTTGTGAAATAAACATCAGGGAACATCTGTCTTTGAATTGTGACCAATATGTATGTGTCCTGAGTGTAATGGTTAAGAGGGTAGGATCTGGAGTCACACTACTTGATGAAGTCCCAGCTCTATCCCTGATTAGCCATGTGAGCTTGGGCAACTTCTCTGTGCCTCAGTTTCCTCGTCTCTCCAGCACGAGGGAGAGAGTGGTAACTCCCTCCTTGAGTTGTCGTGAGGATTATTTATTGCTGCAGTTAAGGTGCTTAGGGCAGGGCTGAGCACAAGGTAAGCATCAGCCCGTTAGCCGGCATTATACTTTGCCTTCTATACTTTGCCTTCTCGACTAGTGATACAAGTTATCTTAATTTAAATAGAATCCATTCTGTACTACTGATTCTTTTTCCCCTTTACATTTTTTTAAACCAAATAAACAATAGCTTTCCATATTCCACAAAAATTGTGTCATATTTGTATCACACATGTATGATGATCTTATGTTTACGATAAAAAAAACTATAAACCTCACCTGAATAAATGTACTTACTACACTGTATTGAAATGATAGATTTTTAAACTAACTTGCTTTTTATCTTTTCTTTCCTTTTCTAAAG
Seq C2 exon
TGATGTTCCTCCATCTTACGTTCAAACTAAATTTTCTAGGCTGAAAGCTGTCTATGTTCCATTTTGGCAGAAAAAGACTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125482-TTF1:NM_007344:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)