MmuINT0167459 @ mm9
Intron Retention
Gene
ENSMUSG00000026803 | Ttf1
Description
transcription termination factor, RNA polymerase I [Source:MGI Symbol;Acc:MGI:105044]
Coordinates
chr2:28936532-28939138:+
Coord C1 exon
chr2:28936532-28936597
Coord A exon
chr2:28936598-28939052
Coord C2 exon
chr2:28939053-28939138
Length
2455 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTTACCTTTCCTTTCTAAAGGGA
3' ss Score
8.53
Exon sequences
Seq C1 exon
GTTGTATGAACTAAATGTGAATGATGCTAATGAAATAGACTGGGAAGATCTTGCTAGCGCCATAGG
Seq A exon
GTAAGACCACTCATTGAACAGTAAGCTTATTCAATGATAAGAGGTTTCAAAATACTTTGTCTTTATGGTGTGTACATGTATACAAGTATGTGTGTACATGTGTTCAGTGCGTACAGGGAGGTCAGTCTCAGGTTACAGGTTCTGTGGCAGCAGGCACCCAGAGATAACTTTTAGTATGTGGCTCCCTATCACACCTCACCAGGCCTAAAACATGGCGTGTGTGCAATTGTGTACAAGTGCAGGAAAGTGCCTGGAGAGGGATCTCAGTCTGTAGTGTTTGCCTCCGGAGCATAAGGATCTGAGTGCAGTCTCATCGTGTATCAAAGCTGACAGCGACAGGGTGGTGGCACATGCAGCCCAGTGCTAGAGGGGTGGGCACAGATCCAAGGACACACACACACACACACACACACACACACACAAGCTCCAGACTGTCTCAAAAGATTACAGAGACACGATAGAGAATACTTCAGCCTCTGTCCTCCACATACAATACCTTCGCATGCTATGTCATCTCTGCACCTTGTGCTTCACTTTGCTTTGTTTTCTCTGTGCAGGATCTCGCTATGTAGCCCAGGTTGGCCTCAAACTCACCATCTTTCTGCCTTTAACTTCAAAAACCTGGGAACTTTTCAGGGCTAGCTATTCACATCCAGAAGCAGTGGAATGGTGTTGCTGATTGACAAGTGTTCCACAGTCCCTGGAATTCTCGCCTGCAACACTGAAGGAAGTCAGGGCAGGAATTGGAGGCAGGAACAAATGCAGAGGCCAGGAACACTGCTTGCTTAACCTGCCTCCTTATAGCACTCAGGTTCTCCCACATTCAGAAACCTGCCCCACATAGTCCAGTTTGGTGGGGGCATTTCTCCGTTGAGGTTCCCTCTTTGAAAATGTTTCTGGTTTGTGTCAGACATAAAAGTAGCCAGCACAGTTTGACTTTTTTTTGTTGTTTTTGTTTTTTAAATAGAAAATAGGTTACATTGTGCAGAATAAGAGAGGCATGGAAAGGAACAGTGTGAGTAGCCCTCTGACCACAGGAAACCAGCCAGAGAGTTTTCTGGTCCCTTCCCAGAGCATTTGTGCAAGAGGCTACAGACCCTGGAACATGTCCAACCATCAGAACTCACGGTGCCCTGGAACCACATCTGACCATCCGAGCTCACTCTGGCCCTGCACTTTTCTCCTCCACCTGCAGGGTCTCCAGGGACTGCCTTTCAGAGGGCAGCTTTGAGGGCCAGTCTTTTTATAATGGTTCCTGTTTTCATTCTCTCCTCGCTCTCTCTCCCTCTCCTACCCTCTTACTGCTCTGGCTGGCCTGACCTCCCTCCTCCCCCGCCACCCTTCTCTTTGTTATTCTTCTGTTGCTCTGTGAGTTTGTTTTTCAGCTTCTCTAATAAGCTCTGCTTTTTCCTAAGCACTGCTTTATCAACAGCACCTAGTAGTTTTTAACCTTTTATCAGAAGTTTAGACAGATAAAGAAACAGATGAACTATACCCTCCTCAAAATCTGGTCATGTCTGACCAGCTAACTCAGCTTTGTCTGTCTCTTCTGCTTGTTTTCTTTTCTTAGTAAATTATATCTGCTTTATAGCCTTGCTACCCTGCAGGATTTGAAAAGTCTCTGAGTAATTCCATTTGGAAATCAATAATACTGTTTCTAGAAATACATTCTACAGAATCCAACTCTCAGTGTACTTGGAGTGAGTTATGTGCCGAATAACCCACTGTGCTGGCATGCCCATGATTGGAGAGGGACTGAGCATGTGGCCCGCCCGGCTGCCTAGCATACATAGAGCCCTGGGTCCTTCCCCCAGCACCACATAGACTCAGGTGCCAACATCCATGGGTAAAGGCAGTTGTCAGTGTTCTGAGTTGCTCAGGACAATCCAAGTAAGAGGGTCAAGCCTGAATATAATCCTGCTCTAAGGCAGTAGGGAGGTCCAGCCAAGTTGTTTTTTGGGTAAAACAAGTTTCTCATACCAAAGCCCCTAATCTAATCTTTGTGTTTCATGAAGGAACGCAGCAGCAGGCCCTGCAACTTTAATCCTCATTGCTTGTTGTCTGCAGTACCCAGTAATGCAAGACATTCCAGGTGTGCCAGGACTGTCTTGTGACAAAAGTCATGCACAGCTGTGAAGCTCCTTCAGAAATACAACTCTGTAGATAACAGAAAAGAATCACTGTTTTCCACAAAGATTTCTTCAAGGTCAAAGTATTTCTAGAAAACAATTCTTTATCCTGCTGTCTACTCCAGATACAGTGAAAAACAGCTATTTCATTCTAACATTTACCCTAGATACAGCGATTTACTAACTAGGATTGCATTACAGGCAGGAGGATCTGGAGTCATCCCTGGCTGGATAGAATGTCCCAGGCCTGCATATGTGAGACCCCATCATAAAAAGAACTGACAGTATACTCATTGATGTTTTTTTCTTACCTTTCCTTTCTAAAG
Seq C2 exon
GGATGTCCCTCCACCTTTTGTTCAGGCAAAATTTTATAAGCTGAAAGCTGCCTGCGTTCCCTTTTGGCAGAAAAAGACTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026803-Ttf1:NM_009442:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: