GgaINT1029321 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9653568-9653980:-
Coord C1 exon
chr13:9653816-9653980
Coord A exon
chr13:9653747-9653815
Coord C2 exon
chr13:9653568-9653746
Length
69 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTATGGCACTTCCCTTATAGGAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GAGATCCCCTTCTACCACATCTGGAGCGGGCTGCAGCCCTACCTGCACTGCACCTTCACCCTGGAGCGCCTCAGCCCCAGCACCTGCGAGCTGGCCTGCAAGATCTGGATCTGGCAGGTGGAGGGCGATGGGCAGAGCTTCACCATCAACTGCAACATCGCCAAG
Seq A exon
GTGAGGGCATGGCGAGAGGAACCCCGGGCGCCCCTGGGCTGCGCTCACCCTATGGCACTTCCCTTATAG
Seq C2 exon
GACACGAGGTTTTCGGACTGGCTGGTCCCTGACAGCGAGGTGGGCTCCCCGGCCCTGGTGGGTCCCAGTGCCTTCAAGATCCCCTTCCTCATCCGCCAGAAGATCATCAGCAGCCTGGACACGCCGTGCGCCCGCGGGGCCGACTGGAGGACGCTCGCCCAGAAACTCAACCTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(34.2=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGATCTGGCAGGTGGA
R:
CTGCTGATGATCTTCTGGCGG
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]