DreINT0171858 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29089493-29089931:+
Coord C1 exon
chr13:29089493-29089657
Coord A exon
chr13:29089658-29089752
Coord C2 exon
chr13:29089753-29089931
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CAACTTATTTTTCTCTTCAGACT
3' ss Score
8.38
Exon sequences
Seq C1 exon
GAAATCCCATTCTATCACATTTGGAGTGGGAGTCAGCGGCCGTTGCACTGCACCTTCAGTCTGGAGAGAGGAAGCCTGGTGGTTTCCCAGCTCACCTGCAAGATCTGTGTCAGACAGGTGGAGGGAGAGGGACAGATATTCCAACTCAACACTGACATCCAAGAG
Seq A exon
GTACAGAAAAACAGCAGGGCATAAATGCATTATGTATTCTGTCAACTCACTCGTGTGTGATTTAATAACTGGCTCCAACTTATTTTTCTCTTCAG
Seq C2 exon
ACTTTGCCGCCCCATTCACCATTGCCAGCAGGCGGTTCATGTCTGCCTTCGTCTCAAGTGGGCCCATATGCTTTCAGGCTGCCCGTCTCCATACGCCAGAAAATTTGTGCCAGTCTGGATGCCCCCAGTGCTCGTGGCTGTGACTGGAGAATGCTGGCTCGCAGCCTGGCCTTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(34.2=44.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGGAAGCCTGGTGGTTT
R:
ATATGGGCCCACTTGAGACGA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]