BtaINT0157559 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27597143-27598570:+
Coord C1 exon
chr28:27597143-27597307
Coord A exon
chr28:27597308-27598388
Coord C2 exon
chr28:27598389-27598570
Length
1081 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTTGCTCCCTGTCCTTCCAGACG
3' ss Score
11.23
Exon sequences
Seq C1 exon
GAGATCCCCTTCTGTCACATTTGGAGTGGCAGCCAGAAGGCCCTGCACTGCACCTTCACGCTGGAGAGGCACAGCCTGGCCTCCACGGAGCTCACCTGCAAGATCTGCGTGCGGCAGGTGGAGGGGGAGGGCCAGATATTCCAGCTGCATACCACGCTGGCAGAG
Seq A exon
GTGAGGGCCAGAGCTCGGACACCCCGTGGGGCTGGGCGCTGCAGGGCGCAGACCCGAGGCTCCCCCTCATCTGGGGGAAGGGCCACCTCCCACAGAACTGTGCCCTCACCTCCCATGTCTGAGCTGGGACGTGCTCATTTTTGGCCAACGTGCGTGCTCAGTCGCTTCAGTCGTGTCTGACTCTTTGTGACCCCATGGACTGTAGCCTGCCAGGCTCCTCGGTCTATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGTCATGCCCTCCTCCAGGGGATCTTCCCAGCCCAGGGATTGAACCCGCATCTCTTATGTCTCCTGCATTGGCAGGTGGGTTCTTTACCACTGGCACCACCTGGGAAACCCCTCACCTCCCATGTCTGAGCTGGAATGTGCTCACTCTTGGCCAACAGCTGTGACTTACTGAGTGCAAGCCTGGGCCTGACCTGTACCAAATCTCACCAGATCTTCACAACCACCAGGGAGACAGATACGAGGATCCCCACCTGGGAGATGAGAAAAAAGATTTAATGGCGGGCAGGGATCGTGGCTCTTGTATCTCCATGATAACCCAGATTGCAGTTCTCCAGCACTATAACCCAGACTGAGGTTTATAAAACCCGAGGCACCCGGGGGACAGTGCCGGGCCTCCCTGCAGTGCAGTGGAGAGGGTGCTGGATGCAGTCTAGACCCAGCCCTGTCACTGACTCACCACGTGACCATGGATAGTCACTTCCCCTTTCTAGACTTCATTTTTGCTTGTGTAAAAGTGGGTCCACGTGGGTGAGACTGTGGCTGAGGCCCTCGTGGCTTTGTAATCACGAGACAGCATGAGAATTGGCTGGGGCCATGCATTAACATGTGCCCTGAGGCTGGGGAAGGGTGTGCCACCGCGGTCCTGGAGAGCTCACCTTCCAGGGGCCTTTGAGCAGCTGGAACCCACCCAGAGCACAGAGAGATGCCAGAGTCTACCCGAGCTCACAGTCCCTGGGCAGGGAGGCTGGAGGGACAGATGCCCAGTGGCATCGCACACAGGGAGCCCTCTGCCCATCTCACCCTTGCTCCCTGTCCTTCCAG
Seq C2 exon
ACGCCTGCTGGCTCCCTAGACGCCCTCTGCTCTGCCCCCAGCAGTGTGGTCACCACCCAACTGGGACCCTACGCCTTCAAGATACCCCTGTCCATCCGCCAGAAGATATGCAACAGCCTAGATGCCCCCAACTCACGTGGCAATGACTGGCGGCTATTGGCACAGAAGCTGTCCATGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(34.2=44.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTTCTGTCACATTTGGAG
R:
GGTCCATGGACAGCTTCTGTG
Band lengths:
342-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]