GgaINT0042396 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12870070-12870502:+
Coord C1 exon
chr6:12870070-12870234
Coord A exon
chr6:12870235-12870323
Coord C2 exon
chr6:12870324-12870502
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATCTCACTTTCCCCTCACAGCAT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAAATCCCCTTCTACCACATCTGGAGTGGCAGCCAGCGAGCCCTGCACTGCACTTTCACACTGGAGAGGTACAGCCAGGCCTCCACCGAGCTCACCTGCAAGATCTGCGTCCGGCAGGTGGAAGGGGAAGGGCAGATCTTCCAACTCCACGTCACGCTGGGAGAG
Seq A exon
GTAAGCTGGAAGGGGACAGCCAAGGGATGTGCAGGCAGAGAATGGGGCTCCTCCCTCCTCTGCTCAAAAATCTCACTTTCCCCTCACAG
Seq C2 exon
CATGCCAACTCCTTCGACACCCTCCACTCGCACAACAGCAGTGCCCCCACCACCCAGCTGGGACCCTACGCCTTCAAAATCCCCCTCTCCATCCGGCAGAAGATCTGCAACAGCCTGGATGCTCCCAACTCCAGGGGGAACGACTGGAGACTTCTCGCCCAGAAACTTTCCATGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(34.2=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTCACCTGCAAGATCTG
R:
GAGAGGGGGATTTTGAAGGCG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]