RnoINT0160604 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30343840-30345355:-
Coord C1 exon
chr20:30345191-30345355
Coord A exon
chr20:30344022-30345190
Coord C2 exon
chr20:30343840-30344021
Length
1169 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCGGTGCCCGCCCTTCCAGACG
3' ss Score
8.26
Exon sequences
Seq C1 exon
GAGATTCCCTTCTACCATGTGTGGAACGGCAGCCAGAAAGCCCTGCACTGCACTTTCACCCTGGAGAGACATAGCCTAGCCTCCACTGAGTTCACCTGTAAGGTCTGCGTGCGGCAGGTAGAAGGGGAAGGCCAGATTTTCCAGCTGCACACCACGCTGGCTGAG
Seq A exon
GTGAGGCTCACTGATACCCTGGGGGCTAAAGCACCTCACCCCCCAGCATCTGCCACAACGACACTCACCTCCTGAGTCACAGCAGGGGTCTGGTCACCTAGAGTAAGCAACAGTCGCCTACTGAGTTCACGGGACACATATTACCATAGCAAGGTATCACGCCCATGGGGAGAGGGTCGTAATGGTCCCCACGTGGAAGATGAAGTCTCAAGGGCTGGGGCTGTGGAGGCAGGAGGATCATATCAGAAGTTCAAGATTGTCCTTAGCTACATATCAATGTCCTTAGGGGCATATCAATGTATTATCCATGGCCATCAGGCTGGCTTTGAACCTGGTCAGGGTAAGGACCGGCCTATGGCTCCCACCCACTAAATCCAAACTAAGCCGGGGATAAAGCCCAGACCCTAAGCTGACCAGTGTAGCAAAAAGCACTCCATACAGGTCTCAAGCCAACTCCGCCCAAGGCAGCTCACCTGTGCTCTCTAGACTGCTCCCCACTGCCTTAGTCAGGGGTTCTATTCCTGCACAAACACCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACACAGGGCCGGAACTTGAAGGGGAGGAGCTGATGCGGAGGCCATGGAGGGATGCTGCTTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTCTGTTATAGAATCCAAGATCACCAGCCCAGGGATGGTGCCACACACAATGGGCTGGGCCCTCCCATCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCATTTACACAACTGAGGCTCCTTTCTCTGTGACAACTTCAGCTTGTGTCAAGTTGGCACATAAAACCACTTATATCAAAGTTAGTCTTTGTAGGCTAGGCCATGGCTATGACTGACATGGGACACTGAGAAACCCTTGCCCTCCAGAAGTGGGCAGCTAGAGAGAACCCAAAGGAGACAAAGATGAGCATAGAAACCAGTGCATCATGGGTACTGGGCAAGCACTCTTCCAATTAAGCTACAGCTTCCGCCCTGAAGCCCCTCCCCAGGCAGGTAGACTGGGTGAGCGCCTGTGTAGCGCTGAGGTTATCTCATTCCGGTGCCCGCCCTTCCAG
Seq C2 exon
ACGCCTGCTGGCTCCCTGGATGCACTCTGCTCTGCCCCTGGCAATGCTGCCACCACACAGCTGGGACCCTATGCCTTCAAGATACCACTGTCCATCCGCCAGAAGATCTGCAACAGCCTGGACGCCCCCAACTCACGGGGCAATGACTGGCGGCTGTTGGCACAGAAGCTCTCCATGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(34.2=44.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTCCCTTCTACCATGTGTG
R:
GTCCATGGAGAGCTTCTGTGC
Band lengths:
345-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]