GgaINT1029662 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22034028-22034437:-
Coord C1 exon
chr7:22034258-22034437
Coord A exon
chr7:22034174-22034257
Coord C2 exon
chr7:22034028-22034173
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCATGCTGCTCACTCTGTAGGGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
AACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTCGGCTCTTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
Seq A exon
GTGGGTATGGCCTCGACCGGCTCCTCCTCGTCCTCCAGAGGATGGGGTGGGCTCGGTGCTGGAGCCATGCTGCTCACTCTGTAG
Seq C2 exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACATCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACGCCAACAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACGAGTACAACACCA
R:
CTTGGAGATGATGTCGGCCAC
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]