RnoINT0162857 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81706034-81706847:+
Coord C1 exon
chr9:81706034-81706213
Coord A exon
chr9:81706214-81706701
Coord C2 exon
chr9:81706702-81706847
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GGACCTCCCTCGTTTCCCAGGGC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGAGGCACCTCCCGAAAGAACAACGTGGAGCCCGTGCCCTCTACAAGGCTGTTTCAGGTCCGAGGGACCAGTGCTGATAACACCAAGGCTTTTGAGGTTACAGCCCGGGCCACCTCCCTCAACTCCAATGATGTCTTCATACTCAAGACTCCGTCCTGCTGCTACCTGTGGTGTGGAAAG
Seq A exon
GTGTGCGAGAGGCCATAGGGCTCCCATCTCCAGTGGATCCTTAGGAGTCTCTCAGTCACAGAACAGATCAGGGCAAAGAATTCTGAGTGATCAGGTCCCACTTACAGGTCTCTTGTGGTAGCCTAAGAATCTCCCTTGCATAGCTCTGCTATTTCTATGCCTCTCTCATTCTCTACAACTGTTCGGAATCAGCCTGTTCTGTTCCTTTCATATGAGGTATCCATCAGCAGGTACTCCCCTGTCTCAACTTTCTCGATGCCTTGTGTCTTTGTCCGTCTGAGGGAGGCACATTCCCTTATCATCCCTGCTTGTCTTCAGACTGTTAAGGGTAGAAGAAAGTAAGAACTGTCCCTCGCAGATGTGCCTGGAGCCCTGATGCAGAAGGACACTCTGACTCGGGAGCTCCAGCTGAATGTAGCAGAAGGGTGAGGTGGAGGGTGGCACCAAGGATGGTCTTCCCAGCGTGATGGACCTCCCTCGTTTCCCAG
Seq C2 exon
GGCTGCAGTGGGGATGAGCGGGAGATGGCCAAGATGGTTGCTGATACCATCTCTCGGACAGAGAAACAAGTGGTGGTCGAGGGGCAGGAGCCAGCCAACTTCTGGATGGCTCTGGGTGGGAAGGCGCCATATGCCAACACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCCGAAAGAACAACGTG
R:
TCTTGGTGTTGGCATATGGCG
Band lengths:
319-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]