GgaINT1029782 @ galGal4
Intron Retention
Gene
ENSGALG00000026044 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr19:75440-75910:+
Coord C1 exon
chr19:75440-75522
Coord A exon
chr19:75523-75655
Coord C2 exon
chr19:75656-75910
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCGCACCGCCCGTCCCGCAGACG
3' ss Score
8.3
Exon sequences
Seq C1 exon
AGGCATACCTGGAAGAGTGCGGCCCGCAGCGCGCCCTGGGCCGGCTCCGAGCCGCGCTGGACGCGTCCGAAGCGGAGGCGGAG
Seq A exon
GTGAGCGGGTGTGAAGCGGAGGCGGGTGAGAGCCCCGCGCCGTGCCCTGCCTTGGGCGGGGCACCGAGGGGATTTGGGGGGACCTCGCCCGTACAGCGCTCCGCCTGACGCTCCCGCACCGCCCGTCCCGCAG
Seq C2 exon
ACGCAGATGCAGCGGTTCCTGGCGCACGAGGTGCCCCTCGATGCCTTCCTGGAGTCCTTCTGCCGCAGCCGCGCGCGCTCCCACGTCTCTCGGACGCAGCTGGAGAAGCTGCAGGAGCTGCTGCAGAGGGGCCGGGACCCTGAGGGGGAGCCCCAGGGGCTCAACCCGGCGTCGGGCCGCGGCGCGGCCTCTCCCAAAGCCCCGCAGCTGCGCTGCGGCTTCGTGCCCGCCGTCCTCGTCCCCGCGGCGGCCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026044:ENSGALT00000044284:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.544
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(18.0=100)
A:
NA
C2:
PF072008=Mod_r=PD(24.0=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACCTGGAAGAGTGCGGC
R:
GGGCTTTGGGAGAGGCCG
Band lengths:
282-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]