MmuINT0174000 @ mm9
Intron Retention
Gene
ENSMUSG00000043614 | Vps37d
Description
vacuolar protein sorting 37D (yeast) [Source:MGI Symbol;Acc:MGI:2159402]
Coordinates
chr5:135548771-135554136:-
Coord C1 exon
chr5:135553932-135554136
Coord A exon
chr5:135549854-135553931
Coord C2 exon
chr5:135548771-135549853
Length
4078 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CCCTCCTGGACGCTACCCAGGTC
3' ss Score
4.65
Exon sequences
Seq C1 exon
GGAGCCGGGGCGGAGCGGGGCCGATCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGTATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGATCTGCTTCAAGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
GTAACGCGGGGGGCGCGGGCAGGAGGAGGGTGTGGGGGGATGGAGAGGTCGGGCTGCGGCCTGCGGGGACCCGGAGACCCAGCCAGCGGAGGCCACCCCCCTGGAGCTGCCAGGCCTCGGGATCATGGGAGCCTGGCACGTCCGAGTGGGCCCCGCGGAGCCGCCCCCGGGGGATGGGGGGCGCCCCGATCCAGCCTGGGGCGAGTGGTGCGGAAGGGGGGCGCCCGGGGATGCACCCGTGCACCCCGGGATGGCCGCGAGGCGTGCCCTCCCGAGGATGCTCCGGGGAGGTGTGTTCTGGGGGGCGGGAGGTGGAGGGTGAGCTGTGTTGTGGGGGGCCCTGGCTCAGCACACCCACGTTCTGTAGGGCCAGAAAGGGGAGGCGCCTTGTTTGGGGGGGGAGAACTGAAGGCCTGCTTGACACCTGGGGTGGGGAGGATAGCTGGGAAAATGGGGGGGGGGTAGTAATGCATTAGATGGGGAGGGGGCTTTGTGTCTGCCATTGGGTATGGGTCTTTGAATACAGAGGCTTGTATTCTGTAGGCCACCATAAGAGAAAGTTGTATATTTCACGGGAGACATAGGCCCGGGCTGGTTGTCTGTCGGGAGGGGGGTACAGAAAGAGAAAGTGTGTGTTACAAGGAGCCAGACGAGGAGGGGCTTGTGCATGGATCAGGGGACAGATGGAGGGAGCGCATTCTCCAGGGGCGGGGAGCTAGGCTTGGCCCTCCTAGAAACAGGCTCAAACAGCCGTCTTCAGGGCCCCAGTGCTGCCTTCTGCTAGGTGAGCAGCTAGCAGGGGCAGGGGACCACAGAAGCAAAGGGGGTGTGTGTTGTGTTCGCGGGGGCGTGTGGGGTTCCACTAGAGGGCCAACAAGGGGGTAGAAGAGATGAGAGGGTGACCTGAGTGGGGGTTGCTGGGAAGGTTCGGGGTGAAAACATCACTCCCCCAAGAGTCAGAACAGGGGGTGGGGATGCTTTCCACACAAACACCTGAGGAGGAAGCGAGACAAAGGCCTGGTATGAGAGGCAAGCTGTCCAAGCGGAGAAAATGGGACAGAGGAGGGAGGGGGGAGCCCTCCGGGACCTAAGCAGACATATTAATTGAAAAATTAAAAATTAACTAACATTTGTAGAGGCCTTCATAGTTTGGTTCACTTAAGTCTCACAACAGCTCGGTGAGCTAGGCGGGTTTTTTGTTTTGTTTTGTTTTGTTTATGTTTTGTTTTGTTTTTAATTGTAGTAGAAACTGGGGCCCAAAGAAAAGATGCAAGGCAAAGCCTGGTCCCTCCACCTGTTGGTCCTGTCACCCTTGCAGGTTGGGGGCTCCGGGGTGCCTTTGGCCAGGCCTGTGGTGGGTGTTGTGCAAGGGTGGACTTCAGGTGACCCTGGGCAGTCTGAGCCCAGGCCTCTTAGCTCTCGTCCACCGCAGTTCCAGGGTCTGCAGCTGGAACGGGATGCCTGCTTGGCCTCTAACTACGCGCTGGCCAAGGAGAACCTGGCCTTGCGGCCCCGCCTGGAGATGGGTCGGACAGCCCTGGCCATCAAGTACCAAGAGCTTCGAGAGGTGGCTGAGAACTGCGCAGACAAACTGCAGAGACTGGGTGAGGGGCGGCCCAGGAGACCTGCTTGGGGCGGGGTTGGCCTTAATTCGTGCCAAGTTCTTAAGGGTGGGACTGGGACACACCTACTCCTGGACAAAGTGTGAAGGGAGTTGGTTTTGGCCTCCTGGAAGAGTGAGGTGTTGACCTGTGGAGGAAGCAGGCATGGAGAACTGGGCTGGGTCCCCCATTGTGTGTAATCCCAGGATTTGGGAGGCAGAGGCAGGAGGATCACAAAACTTCAAGACCAGCCCTAGGTTATGTAGGAGGTCTTGATCAGACTGCTCTGTGTCTTGAGGGGAGACTCTGCATCAAAACAAAAACAAACGGTTGTGTTGAAGAGACCCTGGGCAGTAGAAGAAAGGAGACCCAAGCCAGGCATGGTGACATATGCATATAGTCCCACCACTTGGGAGGCAGACACCGGAGGATCAGTAGTTCAAGGCCAGCCTTGGCTAGAGTGAGTTTGAGGCCAGCCTGGGCTACCCAAGACCCTATCTCAAAAACAAAAACAAAAACGAAAAACAAACCAAAAGCCAACAACAAAATCTCATCAAGGCTGAGGATGGTTCACTAAGTAATGACACTAGGTGGCAAGCTTGAGTTTGCTTCCCAGGACCTACAAGGTGGAAGGGGAAAAGACCAGCGCCTAGAAATTGACCTCTGACCTCTACAACTCTTGAGTGGTATGTGTGTGCCCACCCACATACACACAAGAACACAAAGTAAAAATGTTATTTAAAACAGTTTAAAAAAAACCTAACATCAAAAGGCTGGAGAGATGGCTCCGCATTTGAAGGCACTGACTGCCTCCAGAGGACCTGGGTTCAAACCCCCAGACCCACAGAACAGCTCACAGCTGTCTGTAATGCCAGGCTCTGACACCTGCACATAGACACACATGCAGACAACACCAATGCAAATAAAATGTAAATACACACATTTAAATAAGTAAAAACCCAACCTCAAACAGAAAACAAGAAATGGGGCTGGAGAGATGGCTCAAAAGCTAAAAGCACTTGCTACTACTCCAGAGGACCTGGGTTCGAATCCCAGCACCTCCATACATGGCAGCTCACAACTGCCTATAATTCCAGTTCCATGAAATCCAATAATATCTCTGATGTCCATGGGTACGCATACATATATGCAGGCAAAACACACATATACATGAAATAAAAATTAAAAAAAAAATGGAAGAAACTCAAAGCTTGGATTCCCTAGTGGTCAAAACCTCCCAGTGCTTTATTTTATATTCTAGGATGTAGGACCACCTCATGTCTGACCTAACTGATGGGTTGGGTAGTGGTAGCCTCAATGTGGAAGTGAGGAGGCCATCTGTCCACAGACACTCAGTAGTGCCCGTGTTATTGAACATACTGAGCCAGGTATGGTGGTACATGTTTGTAATCCCAGCACTCAGGAGGCTGAGGCAAAAATAACCACATTTGGCAAGCTAGCCTGAGCTACATAGTAAGACCTGATGATGATGATGATGGCGATGATGGCAGTGACTGTGGCAGCTGGAGAGATGGCTTAGCTGTTGGAAAGGATAGGAGTTTGGTTTCCAACACCCATGCTGGGCAGGTCAAAGACTCCAGCTTCATGCTGGATCTGACAACCACTGGCCTCTTCAGAAATCTGCATTCAAGTTCTCACGCCCATACACAGACACATCCATATAATTAAAACTAAATTCTTTTTTTTAAAAGAAAAAGAAACAACGGTATAGCAAACAAACAGAAATAAGCTGAACTTGTCTGCGCATGCCTCCAATCTCAGCACTTTGAGGTCTAGATCCTGGAGGATCAGGAGTTCAAGGATAGCCTGGGCTACACAGTCCAAGTTAGAGGCTATGTGAGGCCCTGCCTCAAAAGAAAACAAAGCCAGGTGAGGATTTGGAGGCCACAGAGATGGGAACTGTAGAGTCACCTGCAGTCAATGGGAGAGTCAGAGTCCCTGTCTGTCCCCCTGTGGTCCCCAGAGAAGAGCATGCATCGCTGGAGCCCCCAATGTGCGCTGGGCTGGCTGCAGGCTGAGCTGGAAGAGGCTGAGCAGGAGGCTGAGGTGAGGGGTAGAGGTGGCTGGGGCCAGGTCAACAGGGAGGGAAACCAGTCTCATTGGGGTCTTCTCTGAGAAACCCTCCGTGATTGCTTCCAGAACTTTCTGGACTCCGCTCAGGACGGCAGAGTTTGCTGTCCTAGGGACGTCTACAGACACTGGAGGGCAGGGTCGGCTGAGTAGTAAGGCCCATTTCTCAGGGCTGGGTTGGGAGCAGGTCCTTAAGTGTGTTGAAGGGTACGGGACAGCCCTCTTTGTGGAAATAAGGTGGACACCTGTCCAGTCTGGGTAACCCAGAGGCTGGGCCATGTTGGAAGCTCCGGGCCTCTGCTGGCTGGTCACCGTGGGGAAGAAGGAGTCAGGCTCTGATCAGATTGCCTCCCCAACTCTCCCTTTCCCTCCTGGACGCTACCCAG
Seq C2 exon
GTCCAGATGGAGCAGCTGCTGCTGGGGGAACAGAGCCTGGAGGCCTTCCTGCCAGCCTTCCAGAGGGGCCGTGCCCTGGCCCACCTGAGGCGGACACAGGCCGAGAAACTACAGGAGGTGCTGAGGCGTCGAGAGCGCTCTGCCCAGCCGGCCCCCACAACTGCTGCTGCTGCTGCCGCCGCCGCCACCGCCATGGATCCCCCCAAACCCTTCCCTGCTGCTGCCGTCCTGCCCACTGGGGCCGCCCGGGGACCACCTCCAGCAGTACCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCAGTGAAGGGCTCTCCCGGGTGCCCTTTTGGCCCAGCCCCTTTGCTGAGCCCTCGACCCTCTCAGCCTGAACCCCCTCATCGGTAGGAGCCAGGGTGAGGCCTCCCAGCGGGGGTCCAGACAAACTTGATTCATGGCTCCTCCTCCTCCCCCACTGCCTGGGTGGGGGGAGGGGCAGGCCCCTCCCCCTAGCCTCAGGCAGGCCCAGGGCCCTGGAGGCTGAGCTGGGGAAGAGGGGCTCCCCGAAGAGGCCCGAAGAGGGCTGGGGGTGGGGTGGGCAGGGTGCTGGACTCCGGTCACCAAGGAAACTCTGCCTTTTTATTTTATTTTTTCGTCTCCCCGGCTGGGGCCTCCAGGGTGCCAAGCCAGGTCCTCAAATGAAAAAGAACTTTATGGGGTCCTGCTTCTTCCAGAGGGGTCTTGCTTGGGGGCCTGTCGCACCCTGCCACACTACTGGGCTCGAACAACTGCCAAGGCTTACTGGATTGTTCTCATATCCTGAGCTAACCCTTCCTGCAGTTTGGGGGCCCTCCGCCTAGGAGCCGGGCCCAGGGACACCCCCAATGGCCTTGCAGCTGGCCCTGGGGCAAGGTAGGACAGAGGCTTCTGACCTGCACAGGTGAGAGCCTGCCACCCCCAGGAAAGACCATTCTGTATTTTTCTGTCCCTGTCTCCTTAGAATGGAACCTTTTTGAGGGCAGGTCCTTGTCTTTGTATGTTCTGTCCCCAGCCCCGCCTCCTAGGGGCTGTCAATAAATGTGCTGATGGATGACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043614-Vps37d:NM_177574:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=58.7),PF0307011=TENA_THI-4=PU(12.2=39.1)
A:
NA
C2:
PF072008=Mod_r=PD(24.0=27.5),PF0307011=TENA_THI-4=PD(28.6=32.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: