GgaINT1029889 @ galGal4
Intron Retention
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:407425-407893:+
Coord C1 exon
chr5:407425-407510
Coord A exon
chr5:407511-407796
Coord C2 exon
chr5:407797-407893
Length
286 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TCACTCCTTTCCCCTCGCAGGCT
3' ss Score
11.89
Exon sequences
Seq C1 exon
GCTGCTTCGTGGACGACAATGGGGTCGAGTTTCCCATTGGACAGATCTGGTCTCCGGGTGATCCCTGTGAGTTATGCGTCTGCCAG
Seq A exon
GTGAATGAGAACCTACTCTGCTTCACTCCTCCTGCCTGTCCCCATCCCTGCCTCCGTCCCCGTCCCATCCGTGTCCCCATCCCCTCTGCTCATGCCTGGCCTACTCGATCTACTCATGCCTGACCTACTCAATCTCTGGGATTGGCTTCAGCCTCTGTCTTTCTGCCATCCCCATCTCCACGGGCTTTCCACCCCCTCCATACTGCCGTTTAAACCCCCCCCCCCGCTTTGGCTTCAACCCCCGGGGTACGGCCCCAAGGTCTCTGTCACTCCTTTCCCCTCGCAG
Seq C2 exon
GCTGATGGCTCGGTGAGCTGCAAGCGGACAGATTGCGTGGAGACGTGTCCCTACCCCATCCACATCCCGGGGCAGTGCTGCCCCGACTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882:ENSGALT00000045690:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=93.1)
A:
NA
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGACGACAATGGGGTC
R:
CACTGCCCCGGGATGTGG
Band lengths:
157-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]