GgaINT1030396 @ galGal4
Intron Retention
Gene
ENSGALG00000004659 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr17:5251315-5252580:-
Coord C1 exon
chr17:5252392-5252580
Coord A exon
chr17:5251413-5252391
Coord C2 exon
chr17:5251315-5251412
Length
979 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCACAATATTTCTGTGCAGGTC
3' ss Score
8.42
Exon sequences
Seq C1 exon
CAATCTGCTAGAGAGCAAAGCAGATGGGATTGAGGTATCCTATAATGCCTGTGGTGTGCTCTCCCATATCATGTTTGACGGTCCGGAGGCTTGGGGTATATGTGAGCCCCACCGAGAGGAAGTTGTAAAGAGGATGTGGGCAGCCATCCAGAGCTGGGATATCAACTCCAGGAGAAATATCAATTACAG
Seq A exon
GTGAGAAACAGAGAAGTTTGGCCCATTTACCCAGAGCCAGGATTGTCACAGAAAGCAAACACCAACAGACAAAAGGAAAGAGATACAGCTGAGCATGAAGGCTCTGCTCAGAGTGAAGGAGAAATCCTCAGGAATGTATTCTTTAGTGAGAGTTTCACATCTTCCTTTGAGTCAAGGTAGCATGTAACACAGGCTGCTAAAATTGGATACCTTGCTTGGCAGTTCTTATGGGAGGAGCATGGGAACACAGCAGAATTTATCCTGCATTTTTCTGGTGCAGTTGTATAGTTCAGGAAACCCAGGATCTGACTATCTGCTGTGACTGACTAAATAACGTTCTCTGAGACTTCCACCCTTTACACCTCTTCAATACTGTTTAATTCTGAAAGTCACATGTGTTGCTGTAGCTTTCACTCTCCTTTGGAGAATATCGAGACAGTGTGTCCAGAAAGCTCCTAATGGGTTAATACAGCTGGTGGAATCCTCCAAAGCTTTTCCTCTATAAGGGTATCAGGTGCTCTGTTTTCCCATAGTGCTTGGCAGGGATCCCAAACGAATGGCATTCCAGTGCCTTAGCTACAGTACGCACAGGTTATTGTTGTCATAAGAAACAGAGTAGCTATTGCATGTGAGCAGCTGGCATTGGATGGGTATAATTCTGCTTTGGACCTTCTACAGAGCTATCAGTGGTGCTGTTTCAGCTGTCATGAGAAAATGACTGACAGAGAATAGAAATCAACTGACTTCTTTGCAGCTATTTATTTGGACAGCATGTTTATGCTGAAGTGGTATGGCCTGTAAGCCTGCCAGTACTGCCATGTGACACAGACTTGCTCTTTGATGCCAGAATCTTTAACATGCTAAAGGATTTACTGCTATGGTATCTACGAACACAGAGTATGTACTGCTTTGAGTGACAAAGGTGCAGAAAAAAAGCAGTTCTTGGATTTTTAACAAGTTTCACAATATTTCTGTGCAG
Seq C2 exon
GTCATTTGAACCAATCCTTCGACTCCTTCCACAAGGGATCTCTCCTGTCAGCCAGCACTGGGCTACCTGGGCACTGTATAACTTGGTCTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004659:ENSGALT00000007424:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGCAAAGCAGATGGGAT
R:
GGTAGACAGAGACCAAGTTATACAGT
Band lengths:
278-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]