RnoINT0167580 @ rn6
Intron Retention
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8666253-8667270:-
Coord C1 exon
chr3:8667082-8667270
Coord A exon
chr3:8666351-8667081
Coord C2 exon
chr3:8666253-8666350
Length
731 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACGGCGCCTCTCTCCTGCAGGTC
3' ss Score
12.13
Exon sequences
Seq C1 exon
CAACCTGCTGGAAAGCAAGGCCGATGGCATTGAGGTTTCTTACAATGCCTGTGGTGTCCTATCCCACATCATGTTTGATGGGCCTGAAGCCTGGGGTGTCTGTGAACCCCAGCGGGCAGAGGTGGAGGAGCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAG
Seq A exon
GTCAGAGATGGGAAGGTACACAGCATGGAGAGTCAGAAGCTGCTTGTCCCAACATGATGTGCCAGAGCTTTCCACCCTGGTCCTGTTCTCTAAAGGCGATTGCTCTCACTCACTGTAAGGTCCAGTGTGTGAGGGGCACATTCCCACTCGTTAACATGTGTGTTATATCCAAGGCCTGTCTCTTACGCATGTTTGATACAGAACTAAACACACCGCAAAACACAGGTCACCTGTAACCCCACCCCTGTCAGGCTGGCCTCAGTCCTCACTGTACTGGGAGGGTGACTTTGTAGTCACCCGGTCAGTCCTTCTCCCTGCCACACTAGGGACAGCTGGTCATTTATGTCAAACACTCAGTTGAAAGGATAGGCCATGGTGTGTGGCTTTGCTCAAGCCCCAGTCCCTGGGAGGCAGGAAGCTAAATCCCAGGGCCCTTCTGAAGCTTTGCAGATGAGATTTCCTGGCTTGGGGGCTGGAACTGCAGCCTGGCTTAGAGTTACTGTAGGTTTCTCCCAAGGTGTCCCCCTTCCTTACCAGTTCACTCTCTTGGTTGCCAAGACCCTCTTCTCTGACTTTGGTCTTCCCCAGGGTGAACTCCTGGGTAGAGCCAGCCGCAGGGCCCTGAAATCCTACAGGCTTGCCCATACTGCCCTTAGGACCCTGCATGGAGGAGCTCATAGGAGCAAGCCTCACTTCTCCAGCCTCTGGATGACGGCGCCTCTCTCCTGCAG
Seq C2 exon
GTCCTTTGAGCCGATCCTCCGCCTCCTTCCCCAGGGCATCTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832:ENSRNOT00000035002:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGCTGGAAAGCAAGGC
R:
GGTAGACAGACACGAGGTTGT
Band lengths:
286-1017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]