GgaINT1030670 @ galGal4
Intron Retention
Gene
ENSGALG00000026752 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
JH375554.1:2599-3056:-
Coord C1 exon
JH375554.1:2984-3056
Coord A exon
JH375554.1:2731-2983
Coord C2 exon
JH375554.1:2599-2730
Length
253 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTCGTCCCCTCCAAATCCAGGCG
3' ss Score
7.8
Exon sequences
Seq C1 exon
AGCGTTAAGGCCAAAGGATTGTTACAATCCCTTTGTCGAGGACAGACAGACAGACAGACACAAGATGGCTCAG
Seq A exon
GTAATGAGCCCCACTGCTCCCACCCATACCCCAAGACCACTGCAGCCCCCGGGGCCCCCGGCGTCCCCATATCCACCCCCCCCATCTCCACCGCCACCCACCCATTAGCGATTAGGTCCTCGGTTAATTGATCTCCACTTCGGGCGGGATCGGGGTGCAGCGGGACGGCTTCTGCAGCTCTCCGGCCTCGTGTGTTGTTCTGTTTTCTTCTCTATCCCCCCCCACCCCACCCCCTCGTCCCCTCCAAATCCAG
Seq C2 exon
GCGAGCCTGCTGGCGTGTGAAGGGCTCTCCGGCGTCTGCCTGGTGCCCACGGTGGCCAGCAAGAAGATGATGCCGAAGCAGAGCTCGAAGCAGGCGGAGGGCAGGGAGAGGGGCAGCAGCCCCGACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026752:ENSGALT00000042906:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTAAGGCCAAAGGATTGT
R:
CTGCTGCCCCTCTCCCTG
Band lengths:
192-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]