Special

GgaEX1065608 @ galGal4

Exon Skipping

Gene
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
JH375554.1:2599-3250:-
Coord C1 exon
JH375554.1:3148-3250
Coord A exon
JH375554.1:2984-3056
Coord C2 exon
JH375554.1:2599-2730
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTAAAATCCTTCCCTGGGAGAGC
3' ss Score
-10.51
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCCGCCCGCTGCCGCTGCCCCCCCCCCCACAGCCGGGGGGGCGACCGAGGAGGACTGCAGCCACCGGGCGCCCCGATCCCACGCGATGTCGGCGAAGTGGAGG
Seq A exon
AGCGTTAAGGCCAAAGGATTGTTACAATCCCTTTGTCGAGGACAGACAGACAGACAGACACAAGATGGCTCAG
Seq C2 exon
GCGAGCCTGCTGGCGTGTGAAGGGCTCTCCGGCGTCTGCCTGGTGCCCACGGTGGCCAGCAAGAAGATGATGCCGAAGCAGAGCTCGAAGCAGGCGGAGGGCAGGGAGAGGGGCAGCAGCCCCGACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026752_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.477
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCGAGGAGGACTGCAG
R:
CTGCTGCCCCTCTCCCTG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]