HsaEX6066779 @ hg19
Exon Skipping
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:27465]
Coordinates
chr12:53574535-53578824:+
Coord C1 exon
chr12:53574535-53574621
Coord A exon
chr12:53575461-53575776
Coord C2 exon
chr12:53578675-53578824
Length
316 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTTTCTGGTTTCAGGTT
3' ss Score
11.84
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCGCGGCGGTGGGGTTGGCAGGGTGTGCTGGGGCCTGGAGGAGGCGCCGCGCGGCCAGGGAGCCAGCGGGAGGCCGCGCCTGGCAG
Seq A exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAG
Seq C2 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
86%=100=83%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
NA
A:
PF154431=DUF4630=PU(1.9=66.7)
C2:
PF154431=DUF4630=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGTTGGCAGGGTGT
R:
CGAGCACCTCAGCACATCAG
Band lengths:
222-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)