HsaEX6066779 @ hg38
Exon Skipping
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
chr12:53180700-53185040:+
Coord C1 exon
chr12:53180700-53180837
Coord A exon
chr12:53181677-53181992
Coord C2 exon
chr12:53184891-53185040
Length
316 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTTTCTGGTTTCAGGTT
3' ss Score
11.84
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAACGGGCCGGGGTTGGTGTTTGTAAACTTGCCTCGGTCCCGGTGGGGGCAGCCGCGGCGGTGGGGTTGGCAGGGTGTGCTGGGGCCTGGAGGAGGCGCCGCGCGGCCAGGGAGCCAGCGGGAGGCCGCGCCTGGCAG
Seq A exon
GTTTCTGAAACAGATCGTGAGCTTCATCAAGAGAATTCAACTGGAAAACCAAGACTGGTAGACTCTCTTTTTCTTCAGACAATAGGCAGGAGCCAGGCAGAGTCCAGGGATTCTTGGAACACCTATCTTTTCTTCGGAGGACACTAAGTTCTATTTGAAGACAAAGTTCAATATGGCAACAGGACTGATGGGACACGAAGGAGTCGCTACCGTGATTTGGTGACAGTTCTTCAAAACGACAGTGTCTCAAGGAAAGGTGGACCTAGGAACTCCTGAACTTTTGGGTTGCCTTAAGTGAGAAATCAGCATGGCTCAG
Seq C2 exon
GCAAGTCTCCTGGCTTGTGAAGGCCTAGCAGGTGTGAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGATGCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGCGAGCGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651-'0-6,'0-0,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGGTTGGTGTTTGTAAA
R:
CTCGAGCACCTCAGCACATC
Band lengths:
278-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains