GgaINT1030764 @ galGal4
Intron Retention
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2632054-2635636:-
Coord C1 exon
chr22:2635535-2635636
Coord A exon
chr22:2632153-2635534
Coord C2 exon
chr22:2632054-2632152
Length
3382 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCCCTCTTTGTGCCCTGCAGAAT
3' ss Score
10.78
Exon sequences
Seq C1 exon
GCTGATGCTGCGACCAGCTTCCTGAGAGCTGCAAGATCTGGGAATCTGGACAGAGCCTTGGATCATCTCAGGAATGGGGTAGATATTAACACCTGTAACCAG
Seq A exon
GTAGGTGAAACCCACAGAGTTTCTGGTATCACCTCTAGCTCATGTGAAAATTGCCATGCTGTGGCTCCCCAAGGCTGCGGTGGCAGTCACTCTGTCCCTTCCATACTCTGTTCCAAGGGAGAGGGACAGAGAGAGGGAAGGGCCCCAGGGAGCTTACTTGGCCCTGATCCTGCTACGGAGCAGACCATAAGTGGGCAGTGGATACCATGGCAGAGCAAGTTTAAAAACTGTGGGAGGTGTTTAAAAATGGGATGTTTGCGGAACGCCAGTGTGGGGGACTCAGGAGGTGCTGTTCAGGTGGAGCCCCCTCTAACACAGAGCAGGGACAGCTCTGCCCCCAGAAAGGAAAGCTGCAGGCACAGGAATGGTTTGCACATAATTGACAGAACATTTTGTTACCTGTGCAGCTGCCAAATGCATCGACTCAGCCTGAATCAGAGTAGGTGCTGCAGGGAGGGACACAGGGGACTTGGGCTGAGCTGGGGGACAGAGAGGCAGACGGCACTGTCAGCTGCTTTCCAGTACATCAGTGATGCTGGGGAGGCTGACTTGGCAGGTAGCACAAGCGGATGTTCCTCTGGTTCAGTATCAAGTTCCCAAACCAAGCGTAGTTCAGACCTATCAATCTATGCACTGCAGTGGCCGGTGCATTGCTGCAGACATCTTCCCCCAGAAAATGTTGCTGTCTCCTTTTCTTTTCTGACTGACAGTGGTGTGCAGATATGCTGGACTTCTGCTGGCCACTGGGGCATGTTGCACCTTGATTTCTCCCCCCTAGGACACTAGAGGTGGCTTGGGGAAAGCTCATGAGGTGCCCCTTTTGTTCCTCATTCCCAATTATTGTCAATGCATAACCAGCATCCAGGTGTTCCTGTCCTGGGGTTGTGTGGGCATGGACAGGATTGAAATCATAGAAAATATTGTGTTTCTGTCCTTTGAAGATGAAATAGCTTTCCATTTCTTCCCCACAAGGGGCAGTCCCCGTTCGCTGGGAGCAGTCCTGCTTCCAGCCAGATTCCTGCAGCCGATGATGGGGTTTAACACCATGCTGGGTAGCGCGTGGCTGCAGCAGGATGAGGGGCTCCTTTCAGTGGTGCCTTTGCACTGGTTCTTGCCATCTCCCTGAGGTTAGATGGCACTTTGGGGTTTCCTTCTGAGGAATATCAGACCTGTGGGAAAGGTCCAACCTCACATGTCCTGTATAGAATAAGGAGGGATATATGTGGTCAGACCTATCCCACAGGCCCTGTATTCTTACACAAGTGCAGAGACCTTGACATGCCATCTGATCTTCATCCTACCAATGCCATCTTCTTCATGATTGCCATCTGCATCAGTATCCTTATTGTGTTCTGAATCCATGCATGCTGTCCTCACCGGTGAGGAGTTGGAGCTGACGATGAGTGGAGCAGAGCCGGCTGCCAGAACCCAGCAGTCATGGTGGTGTGGGCAGGAATTTCTTCTGGGTCACAACCCAGGGCAGGGTCCAGTCAGGGTACAGCAACATGAAGGAGCATTTTTCCGTAGAGCTGAGTGTGTTGCACTGGCAGCAGCACCCGAGGCTTCTGGAAAGCATTTGCAGTTGGTAAGGGTGTGCGGCACTACTCAGATCAAGTGCATCCCATGGCGGTTTTGGGTCAGACGAGCCGTCAAGCCAGAGCGAACCTGCAAAACAACCTGCATTGTTCCTGAGGCAGAAATATCGATGGGCCTCTGGGAAACAGCCTTCAGTAAACATTGTGCTTATCGCTGTAAGGATGGAGAATAACGATTCCTCAATGGCTTTCAGCTTTCAAAAGGTTATTTATGAATCCTTTGCGTAAGAGGACATATGTGCGAGGAGAGCAGCTGAGTATTCATGATCTTGTCCTCCCTGCATCTTGTTACATGAGTATAACAGGGAAAAAGCGTGTGTTGTGTCTGTGGCTCTTACCCAGATGGTGAGCTCTCAAGATGTGGGTGCCAGTGGGTGCAGAGCTGTGCCCTAGTCAAAGAGCTGCAGCATTCTTGCTTCTTTTTCCCTTGGCAGCCATCCCCTTGTGCTTGGAGCTCCAAGAGATGCTGGAGCTGGTGTGCTGAGGAAGCCTGTAGACTTGCTATCTGTGCATACCTGAGAGGTAGAAAAGAGTCTGTGATCTTGGAAGGCGAGAGGTGGAAGACCTTTTTGTGCTATGATAACCCTCTCTGGAAGCTGTTGTGAGTTTAACTGGGATGTTGAAGGCTGCAACTGGAGCTTGCCCTGGCACGTTCTGCTCCCCTACCTGTATTCAGATGGGGATGAGGCAATCCTGCAAAGTGACCTTCCAGCACCCTCCATAAGCCAAAGCAGATGGCTGGGAGGTGGAGTGCTTGGGCAGCACTGTGTGCTTCTGGGGAGCTGGCAGATCTTTGCCACATGAGAGTTGCACAGGGGTGAGTAAGCACAGTGCATCCATCTGGGAGAAGTGCAGCGCTTTTCCCTTGTGGAGAAAAAAAGTGCCATTTGAAATTGCCTGCAAATATTTAACCTCTCTGCCAGTAAATATCTCAGCCCTTTTGTTCATGTCTGGGAAGCTGGAAATAATGGAACATAAGCTTTCTCTGGGGTGCTGGCAGGCCTAACCCCCCACTTTTGACAGCACAGGGGTATTCCAAGGGTGCTCTTCAGCTCTTTTCTCTGGGGAATGTAGTTTCATACGTAGCTTGGAAAAGGAGGGCTAAACTGGGGCACCCATAGCAGTGTACCCAAGCAGTCACCTGCACTGTTCAAGAGCTTCCTGGATCTGGCAAAGCTGAGCAGCTGCACAACCAGTGCTTCCCCAGAGTCTCTGCTGCAGCTCAGTACTGGAGGAGCAAAGCAGCCTCGGTGCCGAGCACGGGCTGTGGGATGGAATTGGCAGGGTCAGCCTGCAGGGCCACACTTACAAAGCGTGTGCATCCTCACTCTGGGCCATACAGAGAGCTTTGGCTGTGACAAGTGTGGCTGAGGGCAGATCTCAGGGATGGGCACCCCTGGGAAGTCACTGAAGCGGAAATGGGAGCTGACAACAGGAATGTGTCTTGAGCAAGGAGAGCTGAAGCAGTGCCTGTGGAGCCATATGCACCCACTGAGCCGTGGGGACGCCCATCTATAGGAACCAGTCCGCAAGGGCTGCATGTCACAGGGAAACCTCCAGCATTAGTCAGCAGCTCAGTGCACGGGGCTGCATGCAGCTGCCTGGGCAGCATGAAGCCAGCTGCTCAGGGCTCAAAGGCAGAGAGCAGTGAGTCCTGCTCCTGGCAGCCAGCACTTCCCCCAGCGCACACCAAGCACCCGTAGCCAGGTCCATAGAGGAGCTCAAGGGTGGTTCCCAGAGATCATCAGTCTCATCCTGTGACTAATGCCCCTCTTTGTGCCCTGCAG
Seq C2 exon
AATGGGCTGAATGCCTTGCACCTGGCCTCCAAGGAGGGCCACACGAAAATGGTGGTGGAGCTTCTGCACAAGGAGATTGTTTTGGAGACCACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=79.4)
A:
NA
C2:
PF127962=Ank_2=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]