GgaINT1030798 @ galGal4
Intron Retention
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4333468-4334878:-
Coord C1 exon
chr7:4334768-4334878
Coord A exon
chr7:4333498-4334767
Coord C2 exon
chr7:4333468-4333497
Length
1270 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TTTGCTGCCGTGGAATCTAGGAA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GGCTGGCGTTGTGACAACTGCCGCAGGCCTAGCGTGGAGGTGGCCCCCGAAGGCTCAGCTGGCCACACCTACCCCCAGTTCACACAGAGATACCACCAGGCCACAAACACC
Seq A exon
GTGAGTACACCTGTGGGTCTGGGCTGGGGCGTGGGCAGAGGGGCGCTGGGTAGGGCGTGAGGGGTGAGAGTAGCACGCAGCTTTGTGCCTGATCGAGAGCCGTCGCACACTATGATCAGCACAGCACCACTCCGCGCAGCGCAGCGCAGGACGCACGCTTGAGCTCACACTTTCACACTGGTGGGACTCACTCCGTGGCACTGGGAGGTGCCTGCATGCTCCGGCCGAGGCGTAGTGCACGTAGTGATTTCCTAGTTGTCACCTAATGCTGCAAGCCAGCTTTGTGCTGGGAACACTTCCCAGCCCAAACCACAACAGTGTCTGCCCTGACGGGACAAGGCTAACTGCTTTCCTTCCCTCCCGACAGAACGTCAACTGCCCCATTGAGTGTTTCATGCCCCTAGATGTACAGGCAGACACACAACATCCACGGGGAAAGTAACATCCAGCAAGACTTCTTGCGGCAATGGCAACAGACAAACCAAAGCATAAATACTTATCTGCCACGATTACCATCCAAACTGGAGTGATGCTAGCAAAACTGCATCTTTGAGAATGGCCCTTTGCTCCGGAGCCATTTTCCCAGCTTAAGCTCAACTCACAGCTTCTCCAAGCGCCACTCTTGGAGTGTTTCAGACTTTTCTCACGATTGGTAGCAATCTTGTTCTTGCTCAAAGTGTTGAATGCCAGTCAGTATTTACAAATTCAAATAGGGGGAGGGGGAAAAAGCGAGGGTGGTGGGGGGAGATACTAAATCACAAACTGGTGGGGGATCAGAACGTCGAGGGGGAGGGAGAGAGTTGGAATTGAAAGGTTCCCATACTATGCAAACAACATTTGAGTCCAACGTTCCCGACCTTTAGAGATAGGAAAGTCCACCAAACACTTCTGCTTTCACATAAGCGTGCAGCCAGCAATAAGATAGGAACAGCAAATCCAATCACTGTGATATTTAAAATATGCACAGTCCTGATTCTTTCTCCATGATCCTAGTATTTTTCTAGCTGTATCTTTGTATCTCATACTGTTATTTATCAGTTTTGTTCCCCTGACCTTCAAGTGTTTTTAAATGGGAATAAAATGTATTGAAGACACTTAGTGGGCAGTTGACAAAGAGGAATTTGGTGTAATTATGATCAGTGATTATTTTTATACTGTAAGTGCCAAAGCTTTACTACTGTGGAAAAGAAAAAAAACAACTCTTTTAATAAAAAGATTTACAAACCAGGCATGCAGTTGAAGCGCTTCTCTTTGCTGCCGTGGAATCTAG
Seq C2 exon
GAAGAAGACCATTATTCTGATCTGGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578:ENSGALT00000005663:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=PD(8.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]