GgaINT1031291 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:7352955-7353817:+
Coord C1 exon
chr8:7352955-7353098
Coord A exon
chr8:7353099-7353701
Coord C2 exon
chr8:7353702-7353817
Length
603 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTCTTTTTTTTTTTAAAGGAA
3' ss Score
10.31
Exon sequences
Seq C1 exon
AGGGAGGCGACTACCCTGGCAGGCCAACCACAGCCCCCACCCCCACCTCCCAAGTGGCCTGGGATGATCTCAAGTGAACAGCTGAGCTTGGAGCTACACCAGGTGGAAAGGGAAATTGGGAAGAGAACCCGGGAGCTGAGCATG
Seq A exon
GTGAGTGCTGTGGGGGTGGGAGGCAGAGAGGTGGAGTGGAGGGCTGTGTAGCTGCCTGAAGCCCTTTCACCTCAGCAAAACGGCTCTCTGCTGGCTGCCAGCAGCCGGAGTCACCCATCTCCGTATTCACCTCTTGGTTCTTTGAAACCTCCAGAGAAGTTTCGTGATTCTTCGTAAAGGATTTGAATTTGAGCCACTTTAAAATACTTTGCTTTTATTTTGTTGCTGTTAGAAAATAAGTGTGGCATTGGATTTGTTGAAAATATTGTCTCCAAGATCGCTGTGCTATGAGTTGTGTAAATCACTTTAGTACAGAAAACATCTCCTGCAGGTGTAGGCTAGTGTTCAGTGGTCTTTGTGCTGTTACAGTCTGTGGTCTTTGCGTGTTGTTACAAGAATTATCCCTTCCTTTCAGGAAGTACTACATCCTGAGATGATGAGAGTATCTTACCAAGTCTCTTTTCTTGTCTCATGGCTTTTGTGGGCTACGCTGTGCAACTCCAGTTTACAGGCTTCCATCATTGGTCCCAAAGAACAAAGTCCGAAGTTCTTTTAACACCGTGTTAAAGAGTTATTTCTTCTCTCCTCTTTTTTTTTTTAAAG
Seq C2 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587:ENSGALT00000007298:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGACTACCCTGGCA
R:
CTGAATGCCAGTGCGAGGTC
Band lengths:
257-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]