GgaINT1031393 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:7062659-7063787:-
Coord C1 exon
chr8:7063524-7063787
Coord A exon
chr8:7062923-7063523
Coord C2 exon
chr8:7062659-7062922
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGACTTTTTCCTCTCTGCAGAAA
3' ss Score
11.9
Exon sequences
Seq C1 exon
GGATTGACAGCCCAACTAAGCTGTTGACTGACCATGTGACAGAGAATACAATCACTGTTGCCTGGAACAAAGTCCAGGCGTTAATAGATAGATACAGAGTGAATTACACCTCGGCTGATGGGGATACAGAGGAGAGAGAAGTGGAGAAAGACAAGAATGTTACCACCTTGGCAGGACTGGAGCCAGGCATGGAGTATGTTATTCACATCTGGGCAGAAAAGGGAGAACAACAGAGCAAGAGGGCCAGCACTGAGGCTGTGACAG
Seq A exon
GTAAGAGGGCAGTAGGTTAAGAGTATAAGCTACACCCTGGTTTTGCCTTAACACTGAATAAGTCTATCATTTTTGTGGCAGAGGGAAATTCAAGCTTAGGAGACACAATCTTTGGGTTAATGCATCTTGCTGTGAAACCCATTCAACTTTATCACAGAGAGATCGTAATTACCTGTATGTACTATGGATAGACTGCATGGTGATTACTAGTAGTGTATTAGTAGTCTTCACTTGTGAAAATGATGCCATGCCATTCTAGCATCTCTCGTGTATTTGTCTAGTCTTATTTCAATTTGTTGGTGTATTCTTTTTCAAGGACCATTTTATTCTCTTATGTGGTCAGTCCTGGTAAGGATGATATAGTGCTCTGCCTGTTGTTGGCTTATAACGTTGTGAAGATAAGTGTATCCACTACAAGCAGTTGTAAGCATTTACAAGACCCATGCTGTAAATCAGGGACTTGCTGAAAAGAAGTGAGTAAAAGAGTACCTGGGTCTCTTAACAATAGGGAGAAACCAGCCCCAGGGGGGAAGGAGTCTTGTGTTGTCACAGCACAGCCTGTCTATGACAACTTGCATTCTTGACTTTTTCCTCTCTGCAG
Seq C2 exon
AAATTGACAGCCCCACTCACCTGGTGACTGATCAAGTGACAGAGGACACAGTCACCATCTCCTGGGACAGGGTTCTGGCTCTCATAGATAGGTACATGGTGAATTACACCTCTGCCAATGGTGATACTGAGGAGATAGAAGTGGCGAAGAACAAGACTGCCACAACTCTGGTAGGACTGAAACCTGGCACTGAATATGTCATCTACCTCTGGGCAGAGAAAGGAGTGCGGCAGAGCAAGAGGACCAGCACTGAAGCAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004538:ENSGALT00000043017:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTGATGGGGATACAGAG
R:
TGCCAGGTTTCAGTCCTACCA
Band lengths:
343-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]