RnoINT0153922 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77868312-77869563:-
Coord C1 exon
chr13:77869300-77869563
Coord A exon
chr13:77868576-77869299
Coord C2 exon
chr13:77868312-77868575
Length
724 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGAACATTTTCCTTTCAGACA
3' ss Score
7.85
Exon sequences
Seq C1 exon
AAATTGACAGCCCAGAAAACCTGGTGACCGACCGTGTGACAGAGAACAGTCTCTCTGTCTCGTGGGACCCGGTGGAGGCTGAAATAGACAGGTACGTGGTGAGCTACACTTCCGTGGATGGAGAGACAAAGCAGGTTCCAGTGAGGAAGGACCAAAGCAGCACCGTCCTCACCGGCCTGAGTCCAGGTGTGGAGTACAAAGTGTACGTGTGGGCAGAGAAAGGTGATCGAGAGAGCAAGAAGGCCAACACCAAGGCTCCCACAG
Seq A exon
GTGAGGAGAGAGAGAGAGACAGAGAGAGAGGGGGAAGGGAGGGGGGGAGAGAGAGAGAGATGCACAGTTGGATGAAGTGTGAATGTATGGGTGTGAGTGTGCGTGGTACCACGGGCTGGAATCTGAGACTGGAGACTGCAACTGGAATGTTAAGATTCGTGAGAGGTAGCTCAGCTGGTGGAGTGCTTGCTACACAATGTACTTCTGATCCTTAGCGTCCGTATGGAAGACTGGCTGTGATTCCAGCTCTCAGGAGACACACAGGTGGTTCCCTGGGGTTCACTGGCCAGCCAGGCTAATCTAATAAGCCAGCCTCAGTCTCTGAGAGAGAAGTATGATTGCTATGATTGAATAGTAGTGATGTTTTAGCAGACTTGGTGGTTGTGTGTAGAGGGTCTGGTTTTGGGAATACTTATGACATAACTCTCAGTGCTCACCGGAGAAGCAGCCCTTGATAAAATGATAAATTAGATACCCTGACAGGGTGGCAGGTGTTTAATTGGCTGTCTCGATGTACCATATGTTACTATGAAGATATTGTTCCTTCTACAATTTAGGGAGCTGAAAGCCAAGATGTTGGGTGTACAGGTAGCCTGACTTTGAAACTGAGACTCAGAAACTGTTTTCTCCCTTGACTCCCAGCAGAGACTTGGTGTGGTAACTGATTGACTTGTGCTGAATGCTCTGGAAGATAGCTTAGACTTTTTGAACATTTTCCTTTCAG
Seq C2 exon
ACATTGACAGCCCCAAAAACTTGGTGACTGACCAGGTGACAGAGAACACTCTCAGTGTCTCTTGGGACCCTGTTCAGGCCAACATTGACAGGTATATGGTGAGCTACACTTCTGCTGATGGAGAGACCAGGGAGGTTCCAGTGCCTAAGGAGAAGAGCAGCACTGTTCTGACAGGCCTGAGGCCAGGCATGGAGTACAAGGTTCACGTATGGGCCCAGAAGGGGACCCAGGAGAGCAGGAAGGCCAATACCAAGGCCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.730
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGAGGAAGGACCAAAGC
R:
CTTCTGGGCCCATACGTGAAC
Band lengths:
348-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]