HsaALTA0000259-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44143960-44148761:+
Coord C1 exon
chr7:44143960-44144517
Coord A exon
chr7:44148706-44148707
Coord C2 exon
chr7:44148708-44148761
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCCTACCTTGCACCTTCCAGAGA
3' ss Score
6.41
Exon sequences
Seq C1 exon
CTCGGAGCGCCCCGACCACCCCTGAGCCCCTCTGGCTTCGGAGCCCCCCAGCACCCCTTCCCGGGTCCCCTCGCCCACCCTAATCCACTCTCCCTCCCTTTCCCGGATTCCCTCGCTCACCCCATCCTCTCTCCCGCCCCTTCCTGGATTCCCTCACCCGTCTCGATCCCCTCTCCGCCCTTTCCCAGAGACCCAGAGCCCCTGACCCCCCGCGCCCTCCCCGGAGCCCCCCGCGCGTGCCGCGGCCATGGCGGCCGTGCGCGGGGCGCCCCTGCTCAGCTGCCTCCTGGCGTTGCTGGCCCTGTGCCCTGGAGGGCGCCCGCAGACGGTGCTGACCGACGACGAGATCGAGGAGTTCCTCGAGGGCTTCCTGTCAGAGCTAGAACCTGAGCCCCGGGAGGACGACGTGGAGGCCCCGCCGCCTCCCGAGCCCACCCCGCGGGTCCGAAAAGCCCAGGCGGGGGGCAAGCCAGGGAAGCGGCCAGGGACGGCCGCAGAAG
Seq A exon
AG
Seq C2 exon
AAACCCAAAAAGGAGGACAGCAGCCCCAAGGAGGAGACCGACAAGTGGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-0-9,0-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCGAAAAGCCCAGGC
R:
ACTTGTCGGTCTCCTCCTTGG
Band lengths:
105-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)