MmuALTA1006891-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5866433-5867000:+
Coord C1 exon
chr11:5866433-5866510
Coord A exon
chr11:5866920-5866924
Coord C2 exon
chr11:5866925-5867000
Length
5 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTTTATCTTACATGCCCCAGAGA
3' ss Score
5.03
Exon sequences
Seq C1 exon
TGGACTATTATTTCCCCCACCCTCCACCGCAGAAGCCTGATGTTGGACAAGAGGTGGATGAGGAAAAGGAAGAGATGA
Seq A exon
AGAAG
Seq C2 exon
CCCAAAAAGGAGGGTAGTAGCCCCAAGGAGGACACAGAGGACAAGTGGACCGTGGAGAAAAACAAGGACCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-13-19,13-18,13-17-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCCTGATGTTGGACA
R:
TGTCCTCTGTGTCCTCCTTGG
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types