HsaALTA0000429-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171819 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:24078]
Coordinates
chr1:11253637-11254716:+
Coord C1 exon
chr1:11253637-11253831
Coord A exon
chr1:11254518-11254582
Coord C2 exon
chr1:11254583-11254716
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GGCTCTGCTCCTCCTGACAGGAC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACTTCAGGCGGAGGCTGGACCATCATCCAGAGACGAAAAAGTGGCCTTGTCTCCTTCTACCGGGACTGGAAGCAGTACAAGCAGGGCTTTGGCAGCATCCGTGGGGACTTCTGGCTGGGGAACGAACACATCCACCGGCTCTCCAGACAGCCAACCCGGCTGCGTGTAGAGATGGAG
Seq A exon
GACTGGGAGGGCAACCTGCGCTACGCTGAGTATAGCCACTTTGTTTTGGGCAATGAACTCAACAG
Seq C2 exon
CTATCGCCTCTTCCTGGGGAACTACACTGGCAATGTGGGGAACGACGCCCTCCAGTATCATAACAACACAGCCTTCAGCACCAAGGACAAGGACAATGACAACTGCTTGGACAAGTGTGCACAGCTCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171819-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(29.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGGACTGGAAGCAGTA
R:
ATGATACTGGAGGGCGTCGTT
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)