HsaALTA0000429-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171819 | ANGPTL7
Description
angiopoietin like 7 [Source:HGNC Symbol;Acc:HGNC:24078]
Coordinates
chr1:11193580-11194659:+
Coord C1 exon
chr1:11193580-11193774
Coord A exon
chr1:11194461-11194525
Coord C2 exon
chr1:11194526-11194659
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GGCTCTGCTCCTCCTGACAGGAC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTGTTCTGTGACATGGAGACTTCAGGCGGAGGCTGGACCATCATCCAGAGACGAAAAAGTGGCCTTGTCTCCTTCTACCGGGACTGGAAGCAGTACAAGCAGGGCTTTGGCAGCATCCGTGGGGACTTCTGGCTGGGGAACGAACACATCCACCGGCTCTCCAGACAGCCAACCCGGCTGCGTGTAGAGATGGAG
Seq A exon
GACTGGGAGGGCAACCTGCGCTACGCTGAGTATAGCCACTTTGTTTTGGGCAATGAACTCAACAG
Seq C2 exon
CTATCGCCTCTTCCTGGGGAACTACACTGGCAATGTGGGGAACGACGCCCTCCAGTATCATAACAACACAGCCTTCAGCACCAAGGACAAGGACAATGACAACTGCTTGGACAAGTGTGCACAGCTCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171819-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(29.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGGACTGGAAGCAGTA
R:
ATGATACTGGAGGGCGTCGTT
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development