HsaALTA0000897-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134269480-134305577:+
Coord C1 exon
chr9:134269480-134269650
Coord A exon
chr9:134305477-134305480
Coord C2 exon
chr9:134305481-134305577
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTTCTTCTCTATTTCAAAGGCA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GCGCCGAGGCTCCACCGCGCAGCGACGAGCGAGCCCGGGAGGAGGGAGGGAGCGAGCGAGCGAGCAGCCCGCGCCGCCGCCTCGCAATCCGCCGCCATCCCGCCGCCCCCGTGCCCGACCGCCGCCCGACTGCCATCGCCCGGCCCGGCCGCGCCCGCGGAACCAGACCAG
Seq A exon
GCAG
Seq C2 exon
ATCGGGAGCGGTGCCGAGAAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTTGGGGCAAATTACCAAGGGCAAGGATGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.590
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(27.9=97.4),PF130101=pRN1_helical=PU(65.3=82.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCGGAACCAGACCAG
R:
AATTTGCCCCAAACGATCGGA
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)