HsaALTA0000897-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131394093-131430190:+
Coord C1 exon
chr9:131394093-131394263
Coord A exon
chr9:131430090-131430093
Coord C2 exon
chr9:131430094-131430190
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTTCTTCTCTATTTCAAAGGCA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GCGCCGAGGCTCCACCGCGCAGCGACGAGCGAGCCCGGGAGGAGGGAGGGAGCGAGCGAGCGAGCAGCCCGCGCCGCCGCCTCGCAATCCGCCGCCATCCCGCCGCCCCCGTGCCCGACCGCCGCCCGACTGCCATCGCCCGGCCCGGCCGCGCCCGCGGAACCAGACCAG
Seq A exon
GCAG
Seq C2 exon
ATCGGGAGCGGTGCCGAGAAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTTGGGGCAAATTACCAAGGGCAAGGATGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.590
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(19.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCGGAACCAGACCAG
R:
AATTTGCCCCAAACGATCGGA
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development