HsaEX1029675 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131394093-131430259:+
Coord C1 exon
chr9:131394093-131394263
Coord A exon
chr9:131418049-131418246
Coord C2 exon
chr9:131430090-131430259
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCCTTCCCTCCAGACG
3' ss Score
12.58
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCGCCGAGGCTCCACCGCGCAGCGACGAGCGAGCCCGGGAGGAGGGAGGGAGCGAGCGAGCGAGCAGCCCGCGCCGCCGCCTCGCAATCCGCCGCCATCCCGCCGCCCCCGTGCCCGACCGCCGCCCGACTGCCATCGCCCGGCCCGGCCGCGCCCGCGGAACCAGACCAG
Seq A exon
ACGCCTTGAGAAAGGGAGTCCAAAGCCCCGGAGGCAGAGAGTTCAGCCAGCTGCAGGGGGTGATGGTGTCACCACCACTATCTGCTGAACTCCTCTGTGCCAAGGAGCATTGCATCAGGGTGCTGGTGGCACACCTGGGGATCATCATCTCTTCCTTCTAAAGCAGCTGTCTGTCTCCACTTTGTCACTGAGAAAACA
Seq C2 exon
GCAGATCGGGAGCGGTGCCGAGAAAAATTTCCTTACTAGATGACATTTCATCGCAATGTCCGATCGTTTGGGGCAAATTACCAAGGGCAAGGATGGGAAAAGCAAGTACTCGACTCTCAGCCTGTTTGATAAGTATAAAGGAAAATCAGTAGACGCGATTAGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_MULTIEX3-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.590
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(19.6=97.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGAGGGAGCGAG
R:
GGCTGAGAGTCGAGTACTTGC
Band lengths:
255-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains