HsaALTA0000911-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:57024560-57030150:-
Coord C1 exon
chr12:57029966-57030150
Coord A exon
chr12:57024626-57024649
Coord C2 exon
chr12:57024560-57024625
Length
24 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTCTTTCCCCCACGCACAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
GGGACATCACCCTACAGCAGTTCAGGCTGTGTGGTTCGCAGGAAGCATACACTGGCTTTTTGATTCTTGCTAGTTCCCAGCTCACAGTTTGGGAGGATCCAACACCAACCTTTACGTGAAGTGGAGGCCCAAGGACAGTGAGGAGCTGGGTGGTCCCAGCCTGGAGCTGTGCCAGCCTGACATGG
Seq A exon
GAATCTTTCCTTTCCGGTGACCAG
Seq C2 exon
GGCCCTGCAGATGTCGCCAGGAAAGTGGTGATCCAGGCAGGACCAGGCTGCACTGAAGGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACGTGAAGTGGAGGCCC
R:
CTGGATCACCACTTTCCTGGC
Band lengths:
112-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)