RnoALTA0005627-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2514289-2517741:+
Coord C1 exon
chr7:2514289-2514389
Coord A exon
NA
Coord C2 exon
chr7:2517657-2517741
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCTTTCCCCATGTGTAGGAA
3' ss Score
10.39
Exon sequences
Seq C1 exon
CTCTACCGTCGCTGGCCTCGGGCTGGAGGAGGAGGCGCCGCCGCCCGGCTCGGCCACCTGCGCCGCCGCCGCTGCCGCTGCCCGGCCCGGCCTTGCTTCAG
Seq A exon
NA
Seq C2 exon
GAATCTCCTGGATGACCAAAGCCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTATAGGACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCGTCGCTGGCCTC
R:
CATCTGCAGGGCTTTGGTCAT
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]