HsaALTA0000979-3/3 @ hg19
Alternative 3'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32944339-32945347:+
Coord C1 exon
chr6:32944339-32944713
Coord A exon
chr6:32945037-32945218
Coord C2 exon
chr6:32945219-32945347
Length
182 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GAAATGATTTCTTTTTCTAGACA
3' ss Score
6.69
Exon sequences
Seq C1 exon
AAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCCATCTTGGCTCCTGGTTCTCCAGCTAGCCCTCCTGGGAGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAGAGAGTGGTCGCCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCTAAGAAAGGAAAGCTTTCAGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAGTTACTCTCTAAGAAGCATGCTGCCTATGCTTGGCCTTTCTATAAACCAGTGGATGCTTCTGCACTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAG
Seq A exon
ACATAAATATTTCTTCAACCCACCCAAATTCCTTTGACTTCAAACTTGAACCCCAGGGCACAGATCCTTAAGGTCATCCCCACTGTGCTCTCAAGAGAGGGCTCTTCTTGTGGTGTCTGGGGTTGGCAGGGAAAGGTGAGTCTTCCTGCCTGTGCAGCTTCTGATGCTGCCTCCTTCTGCAG
Seq C2 exon
CGGAAGATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-14-23,14-22,14-21-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.6),PF090735=BUD22=PU(20.2=52.0)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0),PF090735=BUD22=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGCCTGACTCTCAGCA
R:
CCTGTGCATCCCGGTAATCAC
Band lengths:
251-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)