HsaALTA0000979-1/3 @ hg19
Alternative 3'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32944339-32945347:+
Coord C1 exon
chr6:32944339-32944713
Coord A exon
NA
Coord C2 exon
chr6:32945219-32945347
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GATGCTGCCTCCTTCTGCAGCGG
3' ss Score
9.38
Exon sequences
Seq C1 exon
AAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCCATCTTGGCTCCTGGTTCTCCAGCTAGCCCTCCTGGGAGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAGAGAGTGGTCGCCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCTAAGAAAGGAAAGCTTTCAGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAGTTACTCTCTAAGAAGCATGCTGCCTATGCTTGGCCTTTCTATAAACCAGTGGATGCTTCTGCACTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAG
Seq A exon
NA
Seq C2 exon
CGGAAGATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-14-23,14-22,14-21-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.6),PF090735=BUD22=PU(20.2=52.0)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0),PF090735=BUD22=FE(13.0=100)
Other Inclusion Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGGCCTGCATGACTACC
R:
AAGCCGTACATCAGCAGCAAA
Band lengths:
122-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)