GgaALTA1006153-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:91567-92087:+
Coord C1 exon
chr16:91567-91938
Coord A exon
chr16:92032-92067
Coord C2 exon
chr16:92068-92087
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGC
5' ss Score
5.95
3' ss Seq
ACCCCCTTCCCTTCCCACAGCGG
3' ss Score
11.9
Exon sequences
Seq C1 exon
AAAAAGGGTGTGAAGCGGAAAGCAGACACCACCACCCCCACCACCACCGCCATCATAGCCACCAGCGGTGAATCCTCCCCGTCAGCCACGCTGCTGGAGGCCAAGGCGGCCAAAATCCCTGCACGGCGCGAGAGTGGCCGCCCCATCAAACCCCCCAAGAAGGACTTGCCGGATTCCCAGCAGCATCAGACCTCCAAAAAGGGCAAATTGTCGGAGCAGCTCAAATACTGCAATGGGATTCTGAAGGAGCTGCTCTCCAAGAAGCACGCTGCCTACGCATGGCCCTTCTACAAGCCGGTCGATGCCTCGGCGCTGGGGCTGCACGATTACCACGAGATCATCAAACACCCCATGGACCTCAGCACCATCAAG
Seq A exon
CGGAAGATGGAGAACCGGGACTACCATGACGCACAG
Seq C2 exon
GAGTTTGCCGCTGATGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(52.8=37.9)
A:
NA
C2:
PF0043920=Bromodomain=PD(44.9=93.0),PF031159=Astro_capsid=PU(17.5=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCATGGCCCTTCTACAAG
R:
CGGACATCAGCGGCAAACTC
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]