BtaALTA0004595-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7243991-7245015:+
Coord C1 exon
chr23:7243991-7244365
Coord A exon
NA
Coord C2 exon
chr23:7244887-7245015
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GATGCTGCCTCCTTCTGCAGCGG
3' ss Score
9.38
Exon sequences
Seq C1 exon
AAAAAGGGGGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGCTATCCTGGCTCCTGGGTCCCCAGCTAGCCCTCCAGGGGGTCTGGAGCCTAAGGCAGCACGGCTCCCCCCTGTGCGTAGAGAAAGTGGCCGCCCTATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAACAACACCAGAGCTCCAAGAAAGGAAAGCTGTCGGAACAGTTAAAACATTGCAATGGCATTTTGAAGGAATTACTGTCTAAGAAGCATGCTGCCTATGCCTGGCCTTTCTATAAACCAGTGGACGCTTCTGCTCTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAG
Seq A exon
NA
Seq C2 exon
CGGAAGATGGAGAATCGCGATTACCGGGACGCACAGGAGTTTGCTGCTGACGTGCGGCTTATGTTCTCCAACTGCTATAAGTATAATCCTCCAGACCATGATGTTGTGGCCATGGCGCGAAAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074-14-12,14-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.326
Domain overlap (PFAM):
C1:
PF090735=BUD22=PU(20.1=52.0),PF0043920=Bromodomain=PU(52.8=37.6)
A:
NA
C2:
PF090735=BUD22=FE(13.0=100),PF0043920=Bromodomain=PD(44.9=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCAGTGGACGCTTCTGC
R:
GTCCCGGTAATCGCGATTCTC
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development