HsaALTA0000982-4/5 @ hg38
Alternative 3'ss
Gene
ENSG00000141867 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr19:15268264-15269042:-
Coord C1 exon
chr19:15268905-15269042
Coord A exon
chr19:15268277-15268331
Coord C2 exon
chr19:15268264-15268276
Length
55 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTCACTTCCTAACCCCGTAGCCA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GATTACTATAAGATCATTAAAACGCCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGGAATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAG
Seq A exon
CCAAACCTTTCGGCTCGGCTGTGCCATGAAGCCAGATCATTTGTTTACAGTTCAG
Seq C2 exon
ACCACAGATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141867-19-20,19-19,19-18,19-17,19-16-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.3=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(5.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains