HsaALTA0001285-1/5 @ hg38
Alternative 3'ss
Gene
ENSG00000123838 | C4BPA
Description
complement component 4 binding protein alpha [Source:HGNC Symbol;Acc:HGNC:1325]
Coordinates
chr1:207104262-207113167:+
Coord C1 exon
chr1:207104262-207104430
Coord A exon
NA
Coord C2 exon
chr1:207113001-207113167
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
AAATTGAGTTCTTTCAGCAGAAA
3' ss Score
1.93
Exon sequences
Seq C1 exon
TGAAATTCAGGGACTCTTTGGTGGAGCAATTACCAGTCAACTTCAGGGTATTATGATAAACTCTGATCTGGGGAGGAACCAGGACTACATAGATCAAGGCAGTTTTCTTCTTTGAGAAACTATCCCAGATATCATCATAGAGTCTTCTGCTCTTCCTCAACTACCAAAG
Seq A exon
NA
Seq C2 exon
AAAAACATCAGCGAAGCAGCAGGCCATGCACCCCCCAAAAACTCCATCTGGGGCTCTTCATAGAAAAAGGAAAATGGCAGCCTGGCCCTTCTCCAGGCTGTGGAAAGTCTCTGATCCAATTCTCTTCCAAATGACCTTGATCGCTGCTCTGTTGCCTGCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123838-0-10,0-9,0-8,0-7,0-6-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTTCTGCTCTTCCTCAACT
R:
ATGAAGAGCCCCAGATGGAGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains