HsaINT0024008 @ hg38
Intron Retention
Gene
ENSG00000123838 | C4BPA
Description
complement component 4 binding protein alpha [Source:HGNC Symbol;Acc:HGNC:1325]
Coordinates
chr1:207104262-207113167:+
Coord C1 exon
chr1:207104262-207104430
Coord A exon
chr1:207104431-207113000
Coord C2 exon
chr1:207113001-207113167
Length
8570 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
AAATTGAGTTCTTTCAGCAGAAA
3' ss Score
1.93
Exon sequences
Seq C1 exon
TGAAATTCAGGGACTCTTTGGTGGAGCAATTACCAGTCAACTTCAGGGTATTATGATAAACTCTGATCTGGGGAGGAACCAGGACTACATAGATCAAGGCAGTTTTCTTCTTTGAGAAACTATCCCAGATATCATCATAGAGTCTTCTGCTCTTCCTCAACTACCAAAG
Seq A exon
GTCGGTGGACTACTAAACCCTTGGGGAAGCTTGGAGGAAAGGCTGGTGGTTTGGCCCTTTAAGGAGTGCAGGATTAGAAGGATAAAACAGAGACAAAAGCTTGGAGGTGTTTTCAGCAGAAATCTTTTCAGGAGCACTGTATTAGGGGGATGTAAGACTTGAGACGTACTTTAAACCCTATCTGAACCTCAAGTTTTAAAAATTATAAATGGAGGAATAATATTGCATTCTAATAAAATAAGCTAAAGAAGAAGAGGTGTAAGGTGTTGCTCTTGTTACTGTATCTAAAAGACAGATGTGTTGGTTTGTTGATCTTTCACCACCTTCCCACATCAGAGTTGAGGCAAGGGGTCAATCAGACTTTTCAAAGGGTTCACAGGAAGCTTGCTTTTCTTAGTCTACATTCTGAAAACTGGGGCCATTTCTATTTTGAGATTTGATTAACCACTCCAAATCTCCTCCACCACTGACAGCAAAGATGTTTAGATTTGGTAATAAGGAGGACACTGGCCAGCCTCCAGTTGGTTTCTGAAGCTAGCAGTCTTAGTCGTCCTCATCTTCTTTACTTTCTGAATTTGACGATGCTGATAACCCTTCCTTCTTGAAATTCTCTTCTTCCTTGGTTGGCCAGGATACAGTACCATTCTGGTCCTCATTTTAATTCTTCAACCACTTGTCTCTTTGCTGATTCCTATTCTATCTCTAAATATGGTAACACCAAAAGAATAAAAAGTAGACTACAGAAGAGGCAGAAGCATCAAAGAAGGTTGGCATTAAGCTTAGAGATATGTTTGAATGTAGTATGAGCACAGAATAAAGGGGCTGATAGAAAAATAAAGAGATTTGGCCAGGTACGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAACCCCTGTCTCTACTAAAATTACAAAATTAGCCAGGCATGGTGGCACATGTCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCATTTGAACCAGGGAGGCAGAGGTTGGGGTGAGCTGAGATCGTGCCATTGCACTCTAGTCTGGGCAACAAGAGTGAAACTCCACCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAGAGATTCTAGGAAGGGTGGGGAAAGTGTGGGAGCCAGTTCTTTCTGGAGTTTGTAAGTGATATAATTGAGAGCCCAGGTATAAGGAAGAAGACACTCAGCCCGAGACTGGAGAAAAATACTATCCTTTCACAAGGTATCTGCATTTTAAAAGGGGGAAGTTAGACAAAATAAATATTAACTTAAAAAGTAACTTCTCATGGAAGGAGAAATTTGAGGACTAAAGATTTTTCCAGTGACTCTCAAATTGCACTGCATTGCTAAGTGCTGATATTATTTTTCACAAGGGACCCGCCATGCTGACTAAAGTTCTTGAGTTGGTTCCATTTCTGCAGGAATTTAAAAGGTGAAGTCCTTGAAATATGAAAGTTGGCTAGAGTAGTCTCAGCTTTTCAGTGAGCAGTTACAGAATTGCAGAATTTGTTCATCTAGGTTTAATGTCATTATTTTAGAGATGGAGGGAACTGATATCCAAGAAGCTGATATAGCTTCTTCAAGATCACAGACTTAGACTGTGGTATTGCTGGAACTCCAACTTGTGTCTTCTCAGCTCGCAAGTTCTAGCCTCCATTCCCATACTCTGTGGCCAGCTGGTTTCTGCTGAGGGACCACCAGGAGTAGTTATGGTGAACTGCAAATGCCGTAGTTGGAGAAGAGTTAGGATGCATCCTGATGGTTTGTTAGGGAAGTCTAGTCACTGTATTATCTCTCTTCAAAACTGACAAAGCATTTCACACACATTATTTCATTTGGTCCTCAGTGAGACAGTCATTCTCATTCTAAAGATAAAATTAAATTGACTTTCATTCCTTTTAGATTTATTATTGTTTATTCTGTCTTATTCCTTCCTCCGTGTAAGTTTTTTTTTTTTTTTTGAAACGGAGTCTCGCTTTGTTGCCCAGACTGGAGTGCGGTGGTGCAATCTCTGCTCACTGCAAGCTCCGTCTCCCGGGTTCACAGGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTGTCTTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGACTTCCTGACCTCGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCTCCTCTGTGTAAGTTTTAAGCTAGTTAAATTCTGGTGCTCAAATTAGGTCTTTCTAAAGGCAGTGAAAGAAATCTCTGCGAAATAAGGAGGAACTCTTTTCTCTTCCTCTGCATCTGCAAAAAAGCAGATGATAATCTGCGTGATAAAACTGACCTTGCAAATGTTTTTTTTTAACAAAGGAGTCACGGGGTTATATAGACCAATTACAATACCACGTTAGAGATGGAAAGTTGAATAAACACCTTCCTTGTCTTCAAGGAATTCACAATGTATTTCGGGAGGCAAAAGCAAATAGATAGTTAGGATACAAAACAATGCTACAATTAAGGTATTAGCCAAGTACTAGAAGAACAGAAAACACTGGCATTTCATGATGAAGTCAGGCAATGCTTCACCAAGGAGGTGACATTTGATCTGAATAGTGAGTAAAGGAATAGTGAGTAAAGGAGAAGTTGGAGGTAAGAGCATTAATGCATGGGAGACATTAACTGCAAATGCTTGCAGGTGTTTTTTAAAAAAATCCTGGCTTTGTATGGTGGCTCACGCCTATAATTCCAGCACTTTGGGAGGCCGAGGTGGGAGGTTCACTTGAGGCCAGGAGTTCAAGACCAGCTTGAGCAACATAGTGAGACCCCTGTCTTTACAAAAAATTAAAAAATTAGCTGGGTGTGATGGCACGCTCCTGTGGTCCCAGCTACTGGGGAGACTGAGGTGGGAGCATCATTCGAGTCCAGGAGGTTGAGGCTGCAGTGAGCTGTGATTGCACCACTTCACTCCAGCTTGGGTGACACAGAGTGAGACCCTGTCTCAAAAAAGAAATCCAGAATGTTTTTGGGGAAGGGTAAGTGCCTCCTTGAGACTGAAGCATGGTGTTCTAAGTGAGAAATGATGGGAAAACTGGGACAGATAGGGGAACCTATGGAAACTGGGAACCATGAATGTTTTTAAGCAGAGTAACAACACATAAATTGCTTTTTAGGGACATAATGGCATCAACATGGAAGCTGGCTTATAAATGTTTGAAGGCTTTTGCAGTGGTCTAGGGTGAGGGGAAGGGAATTATAGGAACCTAAACCTGGACTATGGAAGTGGAGTGTTGGAGAGAGTGGCAGATTCTGGTGCAGCTGCTATGACCAACTTGATAGGACTTGACGACTCTGAATAGTGCAAGGAGGTGAGACAGAGGAGGCAATAATGACTTGGATTTCTAGTCTGGGAGGCTGGGTGGAGATTGTCACCTTCACTGAGACAGAAAGCACAGATATTAAGTAGTGTTGGAGGAACATAGTGAATTTAGTTTGAAACATGTTAAATTCAAGGTGCCTGGGAGATACAAATGAAGTGATTGGAAATATTGATTTGAACCTTGGGAATTTTAACTTAAATTATTATTATTATTATTATTTGCTTAAATGAGAAATCTAACAGAGTCAAAAAGTTTTAGTTTACTTTCAAGTTTGCAGATAAAGAGGAAAGTGTAATAATTATTTCTGGATTTGGCAAGGAAAACTCACAAGCACTTATAACTTTCAGTAAACAGAAATGTTTATTTAAATATTATTCCAGAAAAAAAAATTCACTAAGATAACCAGTCAGAATTACACTTTTCTGAGGTTAAAATTACTGTCATGTGGCAGAGCAATCTCTAAAATCCAGGAACGACTCCTTTGTTAGAAAAAACATTTGCAAGGTCAGTTTTGTCACGTAGATTATCATCTGCTTTTTTGCAGCTGCAGAGGAAAAGAGTTCCTCCTTATTTTACAGAGATTTATTTCATTGCCTTTAGAAAGACGTAATTTGAGCACCAGAATTTAACTAGTTAGCAACCAGAGTAAAGAAGACAAGCCTGAATAGCTTAAAACTTACACGGAGGAAGGAATAAGACAGAATAAAATAATTATTAACAATTGAATTTATGGAGCATGGAAGTTTTTGCATGAACCAGAGACAATTAGGCCCAGAGGTCTGTGGGTGATTCATTTTATTTATTTATTTATTTTTGAGACGGAGTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGGATCACTGTAACCTTTGCCTCCCGGGTTCAAGCGATTAACCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGTCAGGCCGGTCTTGAACTCCTGACCTCGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACCGCGTCTGACCTGTGGGTGATTCAGGTATGATGATTAAAGTTATGGATGTGGATGACTTCCTTTCAGGAAGATAGTTGAGGGCAAGGGAAGACAAAGCCCCAGGACAGCCCCAGAGGCCCCAGCATTCCTCTGCTGTGCATGACACATTAGATCTCACTGTACCAAAGGCCACAGTGGAGACCAGATCCAGGGCTTCTAGCCGGAAGTTCAGTGGATGCTCCTCTGCACTGGGGTGTAATTAAAGTCCCTGGTGATGCAACCATTTATTGCAATTTTAAATCATTATGATGACAATGTTTTGACATCCAGGAGTTTGGCTTCTGACAGAGTGACATTCCAATGCCAATTCTATGAAACTCTTCCCTATAATTTCTTTTGAATGTTTACTATGTGCTGTCCACACACCATGCCAAGCCCCTCTCAGAAATTCCGAGATATAATTACAGTTATCCTTCTTATTTTATAATAAAGGAAACTGAGGCTTAGAGGAACTGAGTGTTTTGTCCATGGGACTCGGTTCCCATGTGGTAGAGCCAGGACGCCAACTCACATGTTCTGGGTGTGACTCCAGAGCCCATGCCCAAGGTCTTGGCCACACTGTCCTCCTCTGTCCCCAGCTCTGTGGCCATGGCCTAGGTGTGAGGATGAAGTAAAGGGAGTGAAATAACTTCCTCATCACAGTGTAGGGTCTGCATTTGTCTGTATCTCCTGTCATAACCTGTGGAAGGAGGAGAACCAGTTTTTGCCTACTGCTTCCCTCCTTCACTGTCCTCCCTTGACTAGTTGATGATATGATGACTTCAGTTTAAGAATGGAAGAGCCTAGAGTAAAATTATTTGGGCCAGTTCTCATTAAAATACAGGTGTTTGCCTTGCTTTAAAATCAGGTAAAATCAGTCCTTAACAAAGCATACACTGTAAGGGGAGACACTGATATGGCACAGTACTACTTTTCTTTGGAACACACGTTATCACTAGGAGCTTTTGGATTTAAATTCAATGCACATTTTGTGAGCACTTTAACTTCATGAGGCGCAGGCTAGGTACTATTGTGGGGCAGAAATAAATGGGAGCATACTCTGTCATTTCAAGGATCTTGTGGTTTAGTGGTGAAGGCAGACTTCAGATGTGAGTTACAGACCAAGTCCGAATCAGAGTTATAAATACAAAATTGTACTTGGTATGTGGAGGCTTGCTTGGATAGGAGGGAATGCTGGAGAAGGGACTGGCAGAATGAGTAGGAATTAAAGAGGAAAAAGAGAGAGGGTAGATGATGTGGACAGGAATGGGAGATAGGAAAGTGCTGGGAATGGTAAGGAATTCTGGTTGTCCAGGATAGCTGGAGCCTAAGGGGTCAGACCACAATACCGAAAAGTTAGTCATCAAAGCCAATTGAGTGAATGCCAGTACTTGAAGGATCAGTTCATAGAAATAAATTTGCTGAATTTATCAAAGTATCAATTTATCTAACATTGTTTCAAGAAACATTCATTTTGGAGGCCAGGCATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGAATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGGCAACATAGTAAGATCACATCTCTATTACAATTTTAGAAAAGAAAAAGAAAAAGAAATCATTTTGAGTATTCAATGAGTATAAATATATCCTTTTTGAATGTAGCTAATGAATACATATTTTAGTGGCATTTAAGATATTTTTGTTCAACTTCTTGAAGCTAATGATTTAATCTTATGGTTGTATTTTTGTAAATATAGTCATGAATATTTTTCTGAACATATTCAACATATATATTTTTCTTGTGAATGTAATAACAACTGCAACAATTCCTAGGGGAAATTTCCACTTTCTACTCTTATCCTTTTGATTTTTCATAGTCAATTCTATTTTGCCACCCCACTGGTGTTTTTAATCTCTTTCTTCAATTTCACTGAAATTCAATAAACACAACAAATCTACTCATTGTCAAAAATTGAAGAAACTTTTTCCCATAGTTTTCATAGTTCATAACATATCTTATTGGGTGGGAGAAATTTGTCACATTTTATGAATTTCACAGATGATGAGTGAGGTGGTTTTCATGATATGCAACCTGCCTGGCTCTCAGCTGTCTCCAGCTTCACAAGATTGTGAGGGCAGAGAGGAGCATAGAGTTAGGAAGGAGGATAATGGGAAAAAAGAGGGGGAAACTGAGTAGAAAGGGGAAGTATGAAGTCCCAGAATGTTGGTCCTGGCTCCTCCCAACCTCTCTAGACCACCTGGATTCATTCAGTACAAAGTCTGTGAACACATTTCCAGTAAGTGACTACAACTGGTAAATTGCTCGTTAGGTGAATTTACGTATTGGCAGAATTGCCCCGGTGGGGATGTATAGAGCTCATGGGACAGGACGTGTGTGACATGGGGTTCCCACAGCTGACAACAGGTGGAGGGATGGCTTCATCAGAACTAAGTTTTAGAAAGAGAAGAAGCTTATGTGAGTCTTTACTCAATGAAGAAATTAGACCCCACAAAGAATGAAGGGCACTATAAACTTCCCTTCTCCCACACAGTTTCTCTCCAAGATGTTTCAGTCCCACATTATGTAAGACTGGCCCATATTACTGAGACCAGCTTTATGTTGAGGGACTGAACATTACCTTAGATATACATTACATTACAGTCCTACATTATGTGGGACTGAAACATCTTGGGGAGAAATATTGATTGAAGGGACTCCCTTTACCTAAATGTATATGGGCTTTGTATGAATTATGGATGCACGAGAGCGTCCAACCATCTGGATCTAACAAAGATGTCAAAGTAAAGGATGAAATTCACTATTTTATGGGAGTGAATTTGGTTAACTTCATATATTCCTTTGAAGACAAGGACTATTTCTTTTCTTAATTTTTTATTTTTATAGATTTACAGTACAGAGATTTCTTAAAAAACTAAAAATAGAACTCCCCTTTGATTCCCACTATTGAGTATCTACCCAAAGGAAAGGGACTTTTTCCTAACACAAACTTAGGATATGTTGTGTTCTCCAAAGGGAATGGGAAGTGGTGATGAAGATTAAAAAAAAAAGTCCTTACTAATTTTGCTTTAAACAAGTCTATATAGTCTGATTTAAAAATAAAAGTGCATTTGCCATGTATATTTTTCATATATATATATGTGTGTGTGTGTGTTTATGATCATTTTTCAAAACTGCAAATTGCTTCATGGTTTATTGCCTTTGTCAATAGTTCTCACAAGGAACTCCCAATACTTCTATACGGCGACTCAACTCTTTCTCTCTATCCCATCATTTTCCTGCCTTTTTGTTTTTTTTTTTTTTTTTTATGTTTGTACCTTTCTTTTAAGTCCTCTGTCATTTCTTTGTTAGATCATCTGGCCAATTGCAAGTCTTCTCACTCAACCTCCCTGTTTCTTTCCTCTAATCCCTTTAATTTATCTTGTGCATGTCTGCCATAATGATCTTAAAGCATAATAATTATGTCATTCCTCAGCTTAAAAACAAACATTCACATCAAAAACAAGCACTTTTATTCCCCAAGGAGTAAAGTCTATGAATTTCCTAAACTTGACGTTTACATCCCACTCAGACACATCTGTAAACTGTCCCTTCCCCATCTCAGACATTCAGCCAAATTGGAATATTATCTATTGTTCCCTCAACATGCCCTGCATCCATTCTGCAGTGTCTTCAGTATACCTAGTGCAGATGCAGTCTCCTCTGCAAAGCCCACTCCCTCCCTCCACTTGGAATCAATCTCTCTTCTGAGCTCACAGCTTCTGCAGAGGCCAATCCTTACTGTCTTGTGCTGTAACATTTGTGCTCAGGGGTTTTTTTGTTTTGTTTCCACTCCAGGCTGTCATTTCCTTGAAGACATGGATCCCATAACATTTATTCTAGTGCTTTATGACAAGTTGGAATTCAATGACTATTTATTAAATTGAGTTCTTTCAGCAG
Seq C2 exon
AAAAACATCAGCGAAGCAGCAGGCCATGCACCCCCCAAAAACTCCATCTGGGGCTCTTCATAGAAAAAGGAAAATGGCAGCCTGGCCCTTCTCCAGGCTGTGGAAAGTCTCTGATCCAATTCTCTTCCAAATGACCTTGATCGCTGCTCTGTTGCCTGCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123838:ENST00000367070:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development