RnoINT0027387 @ rn6
Intron Retention
Gene
ENSRNOG00000004062 | C4bpa
Description
complement component 4 binding protein, alpha [Source:RGD Symbol;Acc:2235]
Coordinates
chr13:47373167-47373587:-
Coord C1 exon
chr13:47373497-47373587
Coord A exon
chr13:47373338-47373496
Coord C2 exon
chr13:47373167-47373337
Length
159 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GAATTCGGGTTTTCTGGCAGAAC
3' ss Score
5.85
Exon sequences
Seq C1 exon
AACACGGGGCTCTGGCGTGTCCTCCTCTGCAAATTCTCTTCCTTTTTCCATGTGGACTGAATTTCTCTTCCTAGAGGTGGCTTTTGCAGAG
Seq A exon
GTGAGTCCTTGCTATGTCGTGTCCCCACGTCTGTGCTCATGTCTCGTCTTCCCTCCCACTCTGGAGTTTCCTTGAAGTCGTGGCTATCACAGCACTTATCCCAGTTCTCCATGACAAGTAGATTCAATGGTTATTTACTGAATTCGGGTTTTCTGGCAG
Seq C2 exon
AACAAATGTGGACAAAGCAGCACCAGGCCCTGCGCCCCACAAGAGCTGCCCACGGGAAGCTTCATAGAAACAGAGACGCCGTGGCCTGGCCCTTGTCTACGTTCTGCAGAGCCTCCGGTCCAACTTTGTTCCAAATGAGCCTCACTGCTGCTCTTTGGGTTGCTGTATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004062:ENSRNOT00000005461:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCCTCCTCTGCAAATT
R:
TACAGCAACCCAAAGAGCAGC
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]