MmuINT0026992 @ mm9
Intron Retention
Gene
ENSMUSG00000026405 | C4bp
Description
complement component 4 binding protein [Source:MGI Symbol;Acc:MGI:88229]
Coordinates
chr1:132553709-132558195:-
Coord C1 exon
chr1:132558025-132558195
Coord A exon
chr1:132553892-132558024
Coord C2 exon
chr1:132553709-132553891
Length
4133 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGTTGTTTACTGAATTCAGGTT
3' ss Score
4.43
Exon sequences
Seq C1 exon
AAACTTGTGTGGGTGGAATGCAAGGATCACTTGCGTGGGTAGACTTCAGAAGCTTTTTTGATGGAGCAAGTACTGGCCAGCTTTAGGATAATATGATCAACTCTCATCTTGGGAGAAACTAGTACAGTAGAGATCCAAGTACCACCACAGAGTCTTTCTCTGCTATTGCAG
Seq A exon
GTCAGTGGGCTACTGAGCACTTGGGTGGGGCATTGTGGGTAAAGCTGGTCATCAGGTTCTTTAGTGTGTGCTCCTCTGTGTTCTATTTATTATTTTTGAGATTACAATTTAATTACATTTTCCCATTCCTTTTCCTCTCTCCAAATCTTCCCATACAGCCCTTCTTGTTCTCTTTCAAATATAGTCTCCTTTTTTAAATTAATTGTTATCACATGCATCTATTCCTAAATACAACCTGTTCAGTCCATATAATGTTACTTTTATGTATGTTTTCAGGGCTGATAATTTGGCGCTAGGAAACCAATTGCTGTGGATCTTCCATGGGAAATACCACAGCTCTTACTACCAGCTTTCCTCAGTTGCCTATAGTTCTTTGTGTAGAATCAAAGCCTCGTGGGATTCCACTGTCTAGTTTTGTATGTTCATCAGTGTTCTTGTTTGGGTCATGTTTGGGAGGTCATGTTGGTGAGACTTTTCTGATACAGTTTCTGATGTTGCTAGGTGACACAATTTCACAGTAAATTCCTTGGACCCTTGGATCCTACAATCGTTCTGCCACCTCCTCTGTAGTTTCTTCTCAGGTGCAGGAGTGTTTCTTAGATGTAGACATCAGAACTGGGACCCATAACTCTGCATTTTGATTGGTTGTAGTTTTCTGCGGTGGCCTCTGTTACAAAGAGAAGTTGGGGTTTTTCTGTTGTTGTTTTTTGTTTTGTGTGTGTGTGTTTTCTGATGAGGGGTTCAAGACTATGTGAGTATGACGATAAATATTTATAGAATGTTGTTAGAGATTATGCTGGCTTAGTAAATTAGTAGTTGTAGATTCTCTAATAACTGGAACTTCACTAGCATTGAGTAGTTAGTTAGCTAGGTTTATAGCAACAGACATGGTTGAATGGGCCTTAAATACAATTAGAGAGTTTCTGGTTACTTTCAAACAATATGTCCCACTATTACACCCTTAGGGTTACTGTATCATGTTGGTCATTGATGCATTCATGGGCATCAGAGCTGGGTAGGACTATTGGTTGCCTTTCCCCTTTTTTTGGAAGCTTGCACAATGTCTTCTAGTAACATTTAAGTCCCCAGAGAGGGGACATTCAGATCAGTTCCATTTCAGGGATCTCTTGACCTTGTTTCTGAAGTGTATGGTGTCTTCAGCAATAGAGACTTACCTTTCACTGTTAGGGCATAACAAAGGGCAATAGCAAGAGGCTGTATGTCTTGGGAGTCTCTTGGACAGCCCAAGATAAAAACTCAAAAAAGGGATTCTTATGTCTGGTATTGAGGGTTTTGTTAGTTAGTCTTTGGGTCCTGGAGTGTTGTGTCCGGCCAGCAGATCACAGACCTGGGTTCTAGTCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAAGGGCTGGGCTGCGCTGAGATAAGGAAGGAACCAAGACAAGCTTTCTGTTCAAGGTTCAATTTTAATGTCAGCAAACATGCTTTATAAAGAAAAGGGGAAGCCCATCCCTGGCCAAGCAAGTTCCTTAGAAGTAGATAGGTTCAGCCTTTTAGTGGGAACTCCTGCGAAGATCTCAGTTAGGTGTTAACTCCGGAAAATTCTTGGGAGAGAACCGCTTTGGCCTCCGGTGGCAGGTTGGGCCTCAGGCAAGTAGTGGCACATCAAAAGAGCAGCACAGCAGGTGGCTCCGCTCAAGTGGTGGCAGATGGTCACAGCCAGCCTTGCTAGGCTGGAAGGAGGTAACACTGGAGGACTCATTATCACCATTAGCCCAGATGAGAAAAAGTTCATTAAAACTATATTTGTATTTTTATACATAGAATTACATGTATTATAGAGTTGTTTTTAGGTAAAAAGCTAAGAGTTGTGTATGGATGACACTATTTCCTTAGAGCGAGCCATCTACTACCTTTAGCTCTTACAGTCTTTCCAACTCTCTTACTCAGAGATCCTGGAAGAAGTGGGGTTTGATGAAGACATCCCATTTAGGACTGAGTAAAGTCTCACTTTCTACACATTGTCCAGTTTTGGGTGACTGTGTTAATGCCAATCTAACTGCAAGAAGAAGCTTCTCTTGGTGGGGTTTAGTGAGGTACTAATATATGGGTATAGCAATGTATCATTAAGATTCATTTTATTGCTATGTTTATAGGGCATAACAACAACAACAACAACAACAATAATATCAATAGATTTTCCTCTAAGTCATGACCTATCTTAGACAATTTATCAGTGCCAGATATGGAATCCATCACATGGAAAGGAGACTAAATCCAATTAAAATAAAAAAGAGTGATTGTTTCCTTCCATATCATTTGTGTCACTATTGCACCAGGATATCTTGCAGGCAGATCTCTGTTGTGGGTCTTAGAGTTTGTATCAAGGTAATATTGATGAATACATTCCTCCTCCTATAGTGTACAAGTACCTCCAAGTATCACGAGTGCTAGTTAGTAAGGGTGAAGCTTCTAGCTGGGTACCAGCTTAGTTTCTGTCTGGCAACATAAGTAATGTAGTTTTCAGCAATGGGGTCTTACCATCAGGTGGAAAGCAAACAATAGCCTTAGTTAGAAATAGCCTGTGATATTCATTTGGTGGCATAAGGTATCTAGTTGGGGCACTATCTCCCCCATTATATGGTTATTCCATTTAAATTCATTCCATAAATGTATATATTCTAGGAAGTGTCTACAGTAGCATATTTCCATATAATTTTGCAAATGGCTTTTAATATATTGGTTGTCACTCCCCATATTCCCTCATTTATTCCCCTCTCCCATTACCCTCCCTATTTAACCCTCATATTCCAGTTTTCTCTTTGTCCATCTCTAAGACTATGCTGTATAGGCTTGAACTCATTGGCACAGGAAAGAACTTTCTGAGCAAGACACTAGCAGCACAGGCATTAAGACCATCAATTAATAAATGGGACCTCACAAGGCTAGAATGCTTCTGTAGAGTAAAGGCTGCTGTTATTTGTGTAAAGCGGCAGCTACAGAATGAAGAAGAAAACATCCTCTTTTAGACAATCTTCACCAGTTACACATCTGGTAGAGGATTATTATTTAGACTATGTAAAGAATTTAAAAAGAAATGCCCTGCCTACCAAGAGAGTAAATGATGCAATTAAAAGAGGGATACAGAATAAATAGCAAGTTCTCAAATGTCGACATTTGAGAACACAAAAAGTTGAGGAAGGCTTAATGAAATGTTTGTAATATTTAGCCATCAGCCAAATGGAAATTGAAACAACTTTGAAATTTTATCTTCCTGTACTCAGAATGGCCAAGATCAATAAAACAAATATCAACACGTGTTAGGGAGAATGCTGGGAAAGGGGAGAATGTATTCCCTGGTGGTGGTAGTGCAAACTGATAAAGCCCCCATGGAAATCAGTGTGGAGTATCCTCAGAAAACTGGACACCAATCTACCAGAAGATCCAGTTAACCACTTTTGAGCATACATGCACAGGACTCTACATCCTACTGCAGAGACACTTATGCATCTATGTTCATTGCTCTTCTATTCATAACATCCAGAAATTGGAAATAACCTATGTGTCTATCGACTAATGATGGGTAATTAAATGTGAGTTATTTACACAATGGAATGTTAGTCAGCTGTTAAGAAAGAAAGATGACATTATGAAATCACAGATAAATAGATTAGTAGGAAAAAAAAATCACCCTTAGATTATCTAGACCCCAAAAGACTAATGTTGTATATTTTCTTTTATATATGGATGTTAACCTTTAAGCCTTCAATATGTATCTACAATCTCAATAACCTTAGGTTAGGTTAGTAATGGACTGGGAGAGAGGAGATGGTCCCCTAATTTGCCAAATTGTAACGCTGTCTCCTGCTTCCAGCTGACTTGAATTTATTCTCTATCTTCACATAACACTGGGCTCCGGTGTATCCTCTCCTGCAAATTCATTTCCTTTTTCCATGTGGACTGAATTTCTCTTCCTAGAGGTGGCTTTTGCAGAGGTGAGTCGTCACTGTGTCATGTTGTAACATCTGTGCCCATGTCTTATCTTCCCACCTAGGCTATAGTTTCTTTGAAGACGTGGCTATCATAGCATGTATCCCAATGCTCTCATGGCAAGTAGATTAAATGGTTGTTTACTGAATTCAG
Seq C2 exon
GTTTCCTGGCAGAACAAATGTGTGCAAAGCAGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCCTGGCCCTTTTCTACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026405-C4bp:NM_007576:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.054
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: