MmuINT1005820 @ mm10
Intron Retention
Gene
ENSMUSG00000026405 | C4bp
Description
complement component 4 binding protein [Source:MGI Symbol;Acc:MGI:88229]
Coordinates
chr1:130657132-130661632:-
Coord C1 exon
chr1:130661448-130661632
Coord A exon
chr1:130657315-130661447
Coord C2 exon
chr1:130657132-130657314
Length
4133 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGTTGTTTACTGAATTCAGGTT
3' ss Score
4.43
Exon sequences
Seq C1 exon
AACTGCTTAACCAGAAACTTGTGTGGGTGGAATGCAAGGATCACTTGCGTGGGTAGACTTCAGAAGCTTTTTTGATGGAGCAAGTACTGGCCAGCTTTAGGATAATATGATCAACTCTCATCTTGGGAGAAACTAGTACAGTAGAGATCCAAGTACCACCACAGAGTCTTTCTCTGCTATTGCAG
Seq A exon
GTCAGTGGGCTACTGAGCACTTGGGTGGGGCATTGTGGGTAAAGCTGGTCATCAGGTTCTTTAGTGTGTGCTCCTCTGTGTTCTATTTATTATTTTTGAGATTACAATTTAATTACATTTTCCCATTCCTTTTCCTCTCTCCAAATCTTCCCATACAGCCCTTCTTGTTCTCTTTCAAATATAGTCTCCTTTTTTAAATTAATTGTTATCACATGCATCTATTCCTAAATACAACCTGTTCAGTCCATATAATGTTACTTTTATGTATGTTTTCAGGGCTGATAATTTGGCGCTAGGAAACCAATTGCTGTGGATCTTCCATGGGAAATACCACAGCTCTTACTACCAGCTTTCCTCAGTTGCCTATAGTTCTTTGTGTAGAATCAAAGCCTCGTGGGATTCCACTGTCTAGTTTTGTATGTTCATCAGTGTTCTTGTTTGGGTCATGTTTGGGAGGTCATGTTGGTGAGACTTTTCTGATACAGTTTCTGATGTTGCTAGGTGACACAATTTCACAGTAAATTCCTTGGACCCTTGGATCCTACAATCGTTCTGCCACCTCCTCTGTAGTTTCTTCTCAGGTGCAGGAGTGTTTCTTAGATGTAGACATCAGAACTGGGACCCATAACTCTGCATTTTGATTGGTTGTAGTTTTCTGCGGTGGCCTCTGTTACAAAGAGAAGTTGGGGTTTTTCTGTTGTTGTTTTTTGTTTTGTGTGTGTGTGTTTTCTGATGAGGGGTTCAAGACTATGTGAGTATGACGATAAATATTTATAGAATGTTGTTAGAGATTATGCTGGCTTAGTAAATTAGTAGTTGTAGATTCTCTAATAACTGGAACTTCACTAGCATTGAGTAGTTAGTTAGCTAGGTTTATAGCAACAGACATGGTTGAATGGGCCTTAAATACAATTAGAGAGTTTCTGGTTACTTTCAAACAATATGTCCCACTATTACACCCTTAGGGTTACTGTATCATGTTGGTCATTGATGCATTCATGGGCATCAGAGCTGGGTAGGACTATTGGTTGCCTTTCCCCTTTTTTTGGAAGCTTGCACAATGTCTTCTAGTAACATTTAAGTCCCCAGAGAGGGGACATTCAGATCAGTTCCATTTCAGGGATCTCTTGACCTTGTTTCTGAAGTGTATGGTGTCTTCAGCAATAGAGACTTACCTTTCACTGTTAGGGCATAACAAAGGGCAATAGCAAGAGGCTGTATGTCTTGGGAGTCTCTTGGACAGCCCAAGATAAAAACTCAAAAAAGGGATTCTTATGTCTGGTATTGAGGGTTTTGTTAGTTAGTCTTTGGGTCCTGGAGTGTTGTGTCCGGCCAGCAGATCACAGACCTGGGTTCTAGTCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAAGGGCTGGGCTGCGCTGAGATAAGGAAGGAACCAAGACAAGCTTTCTGTTCAAGGTTCAATTTTAATGTCAGCAAACATGCTTTATAAAGAAAAGGGGAAGCCCATCCCTGGCCAAGCAAGTTCCTTAGAAGTAGATAGGTTCAGCCTTTTAGTGGGAACTCCTGCGAAGATCTCAGTTAGGTGTTAACTCCGGAAAATTCTTGGGAGAGAACCGCTTTGGCCTCCGGTGGCAGGTTGGGCCTCAGGCAAGTAGTGGCACATCAAAAGAGCAGCACAGCAGGTGGCTCCGCTCAAGTGGTGGCAGATGGTCACAGCCAGCCTTGCTAGGCTGGAAGGAGGTAACACTGGAGGACTCATTATCACCATTAGCCCAGATGAGAAAAAGTTCATTAAAACTATATTTGTATTTTTATACATAGAATTACATGTATTATAGAGTTGTTTTTAGGTAAAAAGCTAAGAGTTGTGTATGGATGACACTATTTCCTTAGAGCGAGCCATCTACTACCTTTAGCTCTTACAGTCTTTCCAACTCTCTTACTCAGAGATCCTGGAAGAAGTGGGGTTTGATGAAGACATCCCATTTAGGACTGAGTAAAGTCTCACTTTCTACACATTGTCCAGTTTTGGGTGACTGTGTTAATGCCAATCTAACTGCAAGAAGAAGCTTCTCTTGGTGGGGTTTAGTGAGGTACTAATATATGGGTATAGCAATGTATCATTAAGATTCATTTTATTGCTATGTTTATAGGGCATAACAACAACAACAACAACAACAATAATATCAATAGATTTTCCTCTAAGTCATGACCTATCTTAGACAATTTATCAGTGCCAGATATGGAATCCATCACATGGAAAGGAGACTAAATCCAATTAAAATAAAAAAGAGTGATTGTTTCCTTCCATATCATTTGTGTCACTATTGCACCAGGATATCTTGCAGGCAGATCTCTGTTGTGGGTCTTAGAGTTTGTATCAAGGTAATATTGATGAATACATTCCTCCTCCTATAGTGTACAAGTACCTCCAAGTATCACGAGTGCTAGTTAGTAAGGGTGAAGCTTCTAGCTGGGTACCAGCTTAGTTTCTGTCTGGCAACATAAGTAATGTAGTTTTCAGCAATGGGGTCTTACCATCAGGTGGAAAGCAAACAATAGCCTTAGTTAGAAATAGCCTGTGATATTCATTTGGTGGCATAAGGTATCTAGTTGGGGCACTATCTCCCCCATTATATGGTTATTCCATTTAAATTCATTCCATAAATGTATATATTCTAGGAAGTGTCTACAGTAGCATATTTCCATATAATTTTGCAAATGGCTTTTAATATATTGGTTGTCACTCCCCATATTCCCTCATTTATTCCCCTCTCCCATTACCCTCCCTATTTAACCCTCATATTCCAGTTTTCTCTTTGTCCATCTCTAAGACTATGCTGTATAGGCTTGAACTCATTGGCACAGGAAAGAACTTTCTGAGCAAGACACTAGCAGCACAGGCATTAAGACCATCAATTAATAAATGGGACCTCACAAGGCTAGAATGCTTCTGTAGAGTAAAGGCTGCTGTTATTTGTGTAAAGCGGCAGCTACAGAATGAAGAAGAAAACATCCTCTTTTAGACAATCTTCACCAGTTACACATCTGGTAGAGGATTATTATTTAGACTATGTAAAGAATTTAAAAAGAAATGCCCTGCCTACCAAGAGAGTAAATGATGCAATTAAAAGAGGGATACAGAATAAATAGCAAGTTCTCAAATGTCGACATTTGAGAACACAAAAAGTTGAGGAAGGCTTAATGAAATGTTTGTAATATTTAGCCATCAGCCAAATGGAAATTGAAACAACTTTGAAATTTTATCTTCCTGTACTCAGAATGGCCAAGATCAATAAAACAAATATCAACACGTGTTAGGGAGAATGCTGGGAAAGGGGAGAATGTATTCCCTGGTGGTGGTAGTGCAAACTGATAAAGCCCCCATGGAAATCAGTGTGGAGTATCCTCAGAAAACTGGACACCAATCTACCAGAAGATCCAGTTAACCACTTTTGAGCATACATGCACAGGACTCTACATCCTACTGCAGAGACACTTATGCATCTATGTTCATTGCTCTTCTATTCATAACATCCAGAAATTGGAAATAACCTATGTGTCTATCGACTAATGATGGGTAATTAAATGTGAGTTATTTACACAATGGAATGTTAGTCAGCTGTTAAGAAAGAAAGATGACATTATGAAATCACAGATAAATAGATTAGTAGGAAAAAAAAATCACCCTTAGATTATCTAGACCCCAAAAGACTAATGTTGTATATTTTCTTTTATATATGGATGTTAACCTTTAAGCCTTCAATATGTATCTACAATCTCAATAACCTTAGGTTAGGTTAGTAATGGACTGGGAGAGAGGAGATGGTCCCCTAATTTGCCAAATTGTAACGCTGTCTCCTGCTTCCAGCTGACTTGAATTTATTCTCTATCTTCACATAACACTGGGCTCCGGTGTATCCTCTCCTGCAAATTCATTTCCTTTTTCCATGTGGACTGAATTTCTCTTCCTAGAGGTGGCTTTTGCAGAGGTGAGTCGTCACTGTGTCATGTTGTAACATCTGTGCCCATGTCTTATCTTCCCACCTAGGCTATAGTTTCTTTGAAGACGTGGCTATCATAGCATGTATCCCAATGCTCTCATGGCAAGTAGATTAAATGGTTGTTTACTGAATTCAG
Seq C2 exon
GTTTCCTGGCAGAACAAATGTGTGCAAAGCAGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCCTGGCCCTTTTCTACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026405:ENSMUST00000027657:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.054
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types