HsaALTA0001983-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164694269-164699499:-
Coord C1 exon
chr2:164699405-164699499
Coord A exon
chr2:164695807-164695833
Coord C2 exon
chr2:164694269-164695806
Length
27 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGATTTTTTTCTCTCAGTAGTTC
3' ss Score
5.61
Exon sequences
Seq C1 exon
AGAACCACACAGTGTAGTATATGATACAAGCAATGGAAAGAAGGTAGTTGACAGTATAAGAAACTTGAAGTCGTTGGGCCCAAACCAAGAGAATG
Seq A exon
TTCAAAATGAAATAATTGTCTATCCAG
Seq C2 exon
AGAACACAGAAGACAATATGAAAAATGGAGTGAAGAAAACAGAAATCAATGTAGAAGGTGTTGCCAAAAATAACAACATTGATATGGAAGTTGAGAGACCATCAAACTCTGAGGCACATGAAACTGATACTGCTATAAGTTACAAGGAAAACCATCTAGCAGCTTCATCAGTACCAGATCAAAAACTGAATCAACCCAGTGCAGAAAAGACAAAAGATGCAGCAATTCAGACAACCCCTTCTTGTAACAGTTTTGATGGGAAACACCAAGATCATAATTTATCTGACTCCAAAGTTGAAGAATGTGTGCAAACTTCAAATAACAACATATCAACTCAACACTCATGCTTAAGTTCACAAGATTCTGTAAATACCTCAAGGGAATTCAGGAGTCAAGGCACCCTAATTATACATTCAGAAGATCCGCTTACCGTAAAAGATCCAATTTGTGCACATGGTAATGATGATCTTTTGCCTCCTGTAGATAGGATTGACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438-82-68,82-67,82-66-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=NA C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCCAAACCAAGAGAATG
R:
GTTTGATGGTCTCTCAACTTCCA
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains